Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 AC078875.1-201ENST00000431907 724 ntBASIC14.87□□□□□ -0.03
VPS13AQ96RL7 AC004837.1-201ENST00000446267 564 ntBASIC14.87□□□□□ -0.03
VPS13AQ96RL7 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 AL139339.2-201ENST00000608063 657 ntBASIC14.87□□□□□ -0.03
VPS13AQ96RL7 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 HNRNPA1P58-201ENST00000403629 610 ntBASIC14.87□□□□□ -0.03
VPS13AQ96RL7 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 HMGB1P24-201ENST00000611897 328 ntBASIC14.87□□□□□ -0.03
VPS13AQ96RL7 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS13AQ96RL7 LINC00554-201ENST00000564841 3011 ntBASIC14.86□□□□□ -0.03
VPS13AQ96RL7 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 RAN-210ENST00000541630 1475 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 GCSHP3-201ENST00000431120 391 ntBASIC14.86□□□□□ -0.03
VPS13AQ96RL7 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 RPS5-204ENST00000598098 536 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 AC233280.19-201ENST00000633223 136 ntBASIC14.86□□□□□ -0.03
VPS13AQ96RL7 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 AC007292.2-201ENST00000593524 1812 ntBASIC14.86□□□□□ -0.03
VPS13AQ96RL7 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
VPS13AQ96RL7 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 AC053503.3-201ENST00000448375 114 ntBASIC14.85□□□□□ -0.03
VPS13AQ96RL7 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 AC093909.3-201ENST00000504783 336 ntBASIC14.85□□□□□ -0.03
VPS13AQ96RL7 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC14.85□□□□□ -0.03
VPS13AQ96RL7 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms