Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 IMPDH1P4-201ENST00000445028 1534 ntBASIC11.63□□□□□ -0.55
LINC00477Q96M19 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 NIN-202ENST00000324330 4364 ntTSL 5 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 AMT-204ENST00000427987 1646 ntTSL 5 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 CD81-202ENST00000381036 880 ntTSL 3 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 SPDYE7P-202ENST00000420373 878 ntBASIC11.62□□□□□ -0.55
LINC00477Q96M19 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 GHSR-202ENST00000427970 912 ntBASIC11.62□□□□□ -0.55
LINC00477Q96M19 MTND6P24-201ENST00000440466 518 ntBASIC11.62□□□□□ -0.55
LINC00477Q96M19 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 ALG1L5P-201ENST00000482043 771 ntBASIC11.62□□□□□ -0.55
LINC00477Q96M19 AP000344.2-201ENST00000512987 629 ntBASIC11.62□□□□□ -0.55
LINC00477Q96M19 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 MIR3687-2-201ENST00000577708 61 ntBASIC11.62□□□□□ -0.55
LINC00477Q96M19 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 AC004835.2-201ENST00000603762 682 ntBASIC11.62□□□□□ -0.55
LINC00477Q96M19 AL133215.2-201ENST00000609242 977 ntBASIC11.62□□□□□ -0.55
LINC00477Q96M19 MIR3687-1-201ENST00000614492 61 ntBASIC11.62□□□□□ -0.55
LINC00477Q96M19 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC11.62□□□□□ -0.55
LINC00477Q96M19 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00477Q96M19 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 LINC00528-201ENST00000600723 2160 ntBASIC11.61□□□□□ -0.55
LINC00477Q96M19 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC11.61□□□□□ -0.55
LINC00477Q96M19 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
LINC00477Q96M19 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC11.61□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms