Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 AL139384.1-201ENST00000612143 3047 ntBASIC14.97□□□□□ -0.01
LMX1AQ8TE12 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 GPAA1P2-201ENST00000417923 928 ntBASIC14.97□□□□□ -0.01
LMX1AQ8TE12 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 MTX1P1-201ENST00000440904 838 ntBASIC14.97□□□□□ -0.01
LMX1AQ8TE12 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 ACR-203ENST00000529621 708 ntTSL 5 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 AL022328.3-201ENST00000607943 679 ntBASIC14.97□□□□□ -0.01
LMX1AQ8TE12 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 PRKN-211ENST00000615065 261 ntTSL 5 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 ENPP7P14-201ENST00000621765 1040 ntBASIC14.97□□□□□ -0.01
LMX1AQ8TE12 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 PCDHB19P-201ENST00000570871 2371 ntBASIC14.97□□□□□ -0.01
LMX1AQ8TE12 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LMX1AQ8TE12 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 KRT8P14-201ENST00000414254 1442 ntBASIC14.96□□□□□ -0.01
LMX1AQ8TE12 AC007969.1-201ENST00000433675 447 ntBASIC14.96□□□□□ -0.01
LMX1AQ8TE12 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 AC006033.1-201ENST00000440505 426 ntBASIC14.96□□□□□ -0.01
LMX1AQ8TE12 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 C2orf69P2-201ENST00000562032 1123 ntBASIC14.96□□□□□ -0.01
LMX1AQ8TE12 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 AP006547.1-201ENST00000563435 692 ntBASIC14.96□□□□□ -0.01
LMX1AQ8TE12 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 EEF1DP1-201ENST00000585891 896 ntBASIC14.96□□□□□ -0.01
LMX1AQ8TE12 KLK3-211ENST00000597483 810 ntTSL 2 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LMX1AQ8TE12 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
LMX1AQ8TE12 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LMX1AQ8TE12 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
LMX1AQ8TE12 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LMX1AQ8TE12 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
LMX1AQ8TE12 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LMX1AQ8TE12 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms