Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 AL080243.2-201ENST00000418783 582 ntBASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 AC027612.4-201ENST00000605371 583 ntBASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 AL596442.2-201ENST00000610240 980 ntBASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 CETN4P-206ENST00000642099 2168 ntBASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 AC015656.1-201ENST00000624209 3578 ntBASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 CNN2P11-201ENST00000429351 262 ntBASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 AP001059.3-201ENST00000619053 235 ntBASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CLHC1Q8NHS4 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLHC1Q8NHS4 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms