Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 RPL28-203ENST00000428193 573 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 RPL28-207ENST00000558815 616 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC020765.3-201ENST00000613051 740 ntBASIC4.82□□□□□ -1.64
SYNE1Q8NF91 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC244669.2-201ENST00000612320 853 ntBASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC004461.2-201ENST00000629517 803 ntBASIC4.82□□□□□ -1.64
SYNE1Q8NF91 TMED7-201ENST00000456936 3757 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC092117.1-201ENST00000621230 3250 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ITGA11-201ENST00000315757 3955 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC007969.1-201ENST00000433675 447 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC022497.1-201ENST00000624916 3691 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ESYT3-202ENST00000389567 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 PDIA3P1-201ENST00000471856 1510 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC091046.1-201ENST00000331871 207 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC136604.1-201ENST00000418535 575 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC093724.1-201ENST00000448659 1027 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC084346.2-201ENST00000607097 949 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 ZNF544-208ENST00000596825 3516 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AC092127.1-201ENST00000567093 3455 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AL391005.1-201ENST00000623953 2435 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 AL021920.2-201ENST00000624828 1351 ntBASIC4.81□□□□□ -1.64
SYNE1Q8NF91 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SYNE1Q8NF91 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms