Protein–RNA interactions for Protein: Q6STE5

SMARCD3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3Q6STE5 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 FGD5P1-202ENST00000614866 2498 ntBASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 KRT18P32-201ENST00000424695 1287 ntBASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 CEND1P1-201ENST00000451006 455 ntBASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 POLD2P1-201ENST00000511220 997 ntBASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 PUS1-205ENST00000535067 838 ntTSL 3 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 BANF1P1-201ENST00000553684 263 ntBASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 INTS4P1-203ENST00000641008 3683 ntBASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 CICP11-201ENST00000434745 2827 ntBASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 AC139749.1-202ENST00000617529 3139 ntBASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMARCD3Q6STE5 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 WASH3P-207ENST00000560956 1394 ntBASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 FO538757.1-201ENST00000623083 1397 ntBASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 MIR574-201ENST00000385209 96 ntBASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 SPDYE17-201ENST00000412399 783 ntBASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.15□□□□□ -0.14
SMARCD3Q6STE5 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms