Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA1P55317 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.96□□□□□ -0.01
FOXA1P55317 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA1P55317 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
FOXA1P55317 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA1P55317 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA1P55317 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
FOXA1P55317 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA1P55317 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA1P55317 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.96□□□□□ -0.01
FOXA1P55317 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.96□□□□□ -0.01
FOXA1P55317 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.96□□□□□ -0.01
FOXA1P55317 AC092865.5-201ENST00000545435 363 ntBASIC14.96□□□□□ -0.01
FOXA1P55317 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.96□□□□□ -0.01
FOXA1P55317 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA1P55317 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA1P55317 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.96□□□□□ -0.01
FOXA1P55317 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA1P55317 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA1P55317 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA1P55317 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.96□□□□□ -0.02
FOXA1P55317 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA1P55317 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA1P55317 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
FOXA1P55317 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA1P55317 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA1P55317 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA1P55317 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA1P55317 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA1P55317 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
FOXA1P55317 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
FOXA1P55317 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.95□□□□□ -0.02
FOXA1P55317 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.95□□□□□ -0.02
FOXA1P55317 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
FOXA1P55317 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 AL139400.1-201ENST00000366220 510 ntBASIC14.95□□□□□ -0.02
FOXA1P55317 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.95□□□□□ -0.02
FOXA1P55317 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.95□□□□□ -0.02
FOXA1P55317 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 HLA-V-204ENST00000476601 1289 ntBASIC14.95□□□□□ -0.02
FOXA1P55317 HLA-J-203ENST00000494367 1087 ntBASIC14.95□□□□□ -0.02
FOXA1P55317 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.95□□□□□ -0.02
FOXA1P55317 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.95□□□□□ -0.02
FOXA1P55317 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.95□□□□□ -0.02
FOXA1P55317 AC051619.7-201ENST00000568314 623 ntBASIC14.95□□□□□ -0.02
FOXA1P55317 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC14.95□□□□□ -0.02
FOXA1P55317 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.95□□□□□ -0.02
FOXA1P55317 AL596442.2-201ENST00000610240 980 ntBASIC14.95□□□□□ -0.02
FOXA1P55317 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.95□□□□□ -0.02
FOXA1P55317 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.95□□□□□ -0.02
FOXA1P55317 AL109936.8-201ENST00000641772 604 ntBASIC14.95□□□□□ -0.02
FOXA1P55317 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.95□□□□□ -0.02
FOXA1P55317 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
FOXA1P55317 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
FOXA1P55317 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
FOXA1P55317 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
FOXA1P55317 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
FOXA1P55317 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA1P55317 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA1P55317 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
FOXA1P55317 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.94□□□□□ -0.02
FOXA1P55317 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.94□□□□□ -0.02
FOXA1P55317 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
FOXA1P55317 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
FOXA1P55317 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA1P55317 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.94□□□□□ -0.02
FOXA1P55317 AC104457.1-201ENST00000401024 814 ntBASIC14.94□□□□□ -0.02
FOXA1P55317 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.94□□□□□ -0.02
FOXA1P55317 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA1P55317 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.94□□□□□ -0.02
FOXA1P55317 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA1P55317 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms