Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.09■□□□□ 0.17
CDH6P55285 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CDH6P55285 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.09■□□□□ 0.17
CDH6P55285 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
CDH6P55285 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.09■□□□□ 0.17
CDH6P55285 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.09■□□□□ 0.17
CDH6P55285 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.09■□□□□ 0.17
CDH6P55285 GHSR-202ENST00000427970 912 ntBASIC16.09■□□□□ 0.17
CDH6P55285 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.09■□□□□ 0.17
CDH6P55285 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CDH6P55285 AL589987.1-201ENST00000453380 819 ntBASIC16.09■□□□□ 0.17
CDH6P55285 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.09■□□□□ 0.17
CDH6P55285 RNA5SP421-201ENST00000516864 134 ntBASIC16.09■□□□□ 0.17
CDH6P55285 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.09■□□□□ 0.17
CDH6P55285 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CDH6P55285 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.09■□□□□ 0.17
CDH6P55285 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 ZBED1P1-201ENST00000502364 1930 ntBASIC16.09■□□□□ 0.17
CDH6P55285 WASH3P-207ENST00000560956 1394 ntBASIC16.09■□□□□ 0.17
CDH6P55285 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
CDH6P55285 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.09■□□□□ 0.17
CDH6P55285 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.09■□□□□ 0.17
CDH6P55285 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.09■□□□□ 0.17
CDH6P55285 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.08■□□□□ 0.17
CDH6P55285 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
CDH6P55285 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
CDH6P55285 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CDH6P55285 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
CDH6P55285 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
CDH6P55285 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.08■□□□□ 0.16
CDH6P55285 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.08■□□□□ 0.16
CDH6P55285 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.08■□□□□ 0.16
CDH6P55285 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.08■□□□□ 0.16
CDH6P55285 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.08■□□□□ 0.16
CDH6P55285 MEIS3P1-201ENST00000495167 958 ntBASIC16.08■□□□□ 0.16
CDH6P55285 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
CDH6P55285 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.08■□□□□ 0.16
CDH6P55285 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.08■□□□□ 0.16
CDH6P55285 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.08■□□□□ 0.16
CDH6P55285 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.08■□□□□ 0.16
CDH6P55285 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.08■□□□□ 0.16
CDH6P55285 AC000095.1-201ENST00000603208 874 ntBASIC16.08■□□□□ 0.16
CDH6P55285 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.08■□□□□ 0.16
CDH6P55285 AL158212.4-201ENST00000624062 1286 ntBASIC16.08■□□□□ 0.16
CDH6P55285 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.08■□□□□ 0.16
CDH6P55285 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.08■□□□□ 0.16
CDH6P55285 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
CDH6P55285 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.08■□□□□ 0.16
CDH6P55285 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.08■□□□□ 0.16
CDH6P55285 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.08■□□□□ 0.16
CDH6P55285 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
CDH6P55285 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH6P55285 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.07■□□□□ 0.16
CDH6P55285 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.07■□□□□ 0.16
CDH6P55285 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 AC068418.2-201ENST00000577309 3703 ntBASIC16.07■□□□□ 0.16
CDH6P55285 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.07■□□□□ 0.16
CDH6P55285 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
CDH6P55285 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH6P55285 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms