Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MBLAC2-202ENST00000514906 1936 ntBASIC12.72□□□□□ -0.37
CDX1P47902 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC12.72□□□□□ -0.37
CDX1P47902 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
CDX1P47902 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC12.72□□□□□ -0.37
CDX1P47902 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC12.72□□□□□ -0.37
CDX1P47902 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CDX1P47902 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CDX1P47902 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
CDX1P47902 BAD-202ENST00000394531 631 ntTSL 3 BASIC12.72□□□□□ -0.37
CDX1P47902 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC12.72□□□□□ -0.37
CDX1P47902 SYS1-203ENST00000414310 795 ntTSL 3 BASIC12.72□□□□□ -0.37
CDX1P47902 AC107890.1-201ENST00000422478 521 ntBASIC12.72□□□□□ -0.37
CDX1P47902 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC12.72□□□□□ -0.37
CDX1P47902 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC12.72□□□□□ -0.37
CDX1P47902 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC12.72□□□□□ -0.37
CDX1P47902 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC12.72□□□□□ -0.37
CDX1P47902 BAD-207ENST00000544785 525 ntTSL 3 BASIC12.72□□□□□ -0.37
CDX1P47902 AC140878.1-201ENST00000565277 250 ntBASIC12.72□□□□□ -0.37
CDX1P47902 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC12.72□□□□□ -0.37
CDX1P47902 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
CDX1P47902 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC12.72□□□□□ -0.37
CDX1P47902 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CDX1P47902 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC12.72□□□□□ -0.37
CDX1P47902 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CDX1P47902 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC12.72□□□□□ -0.37
CDX1P47902 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
CDX1P47902 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC12.72□□□□□ -0.37
CDX1P47902 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDX1P47902 AC112504.1-201ENST00000623415 1841 ntBASIC12.72□□□□□ -0.37
CDX1P47902 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
CDX1P47902 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC12.71□□□□□ -0.37
CDX1P47902 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC12.71□□□□□ -0.37
CDX1P47902 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC12.71□□□□□ -0.37
CDX1P47902 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC12.71□□□□□ -0.37
CDX1P47902 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC12.71□□□□□ -0.37
CDX1P47902 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC12.71□□□□□ -0.37
CDX1P47902 GGT4P-201ENST00000623672 1708 ntBASIC12.71□□□□□ -0.37
CDX1P47902 LINC01144-201ENST00000626198 1710 ntBASIC12.71□□□□□ -0.37
CDX1P47902 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC12.71□□□□□ -0.37
CDX1P47902 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC12.71□□□□□ -0.37
CDX1P47902 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC12.71□□□□□ -0.37
CDX1P47902 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC12.71□□□□□ -0.37
CDX1P47902 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC12.71□□□□□ -0.37
CDX1P47902 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 VMA21-202ENST00000370361 693 ntTSL 5 BASIC12.71□□□□□ -0.37
CDX1P47902 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CDX1P47902 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
CDX1P47902 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC12.71□□□□□ -0.37
CDX1P47902 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC12.71□□□□□ -0.37
CDX1P47902 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC12.71□□□□□ -0.37
CDX1P47902 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC12.71□□□□□ -0.37
CDX1P47902 AC093724.1-201ENST00000448659 1027 ntBASIC12.71□□□□□ -0.37
CDX1P47902 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC12.71□□□□□ -0.37
CDX1P47902 AC125807.1-201ENST00000483097 614 ntBASIC12.71□□□□□ -0.37
CDX1P47902 RNA5SP421-201ENST00000516864 134 ntBASIC12.71□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms