Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
HOXD3P31249 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
HOXD3P31249 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 AL162727.3-201ENST00000635661 2787 ntBASIC11.97□□□□□ -0.49
HOXD3P31249 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC11.97□□□□□ -0.49
HOXD3P31249 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC11.97□□□□□ -0.49
HOXD3P31249 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
HOXD3P31249 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 LBX2-201ENST00000341396 886 ntTSL 3 BASIC11.97□□□□□ -0.49
HOXD3P31249 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC11.97□□□□□ -0.49
HOXD3P31249 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC11.97□□□□□ -0.49
HOXD3P31249 AL442647.2-201ENST00000429864 857 ntBASIC11.97□□□□□ -0.49
HOXD3P31249 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
HOXD3P31249 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC11.97□□□□□ -0.49
HOXD3P31249 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC11.97□□□□□ -0.49
HOXD3P31249 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC11.97□□□□□ -0.49
HOXD3P31249 BCRP2-202ENST00000447763 634 ntBASIC11.97□□□□□ -0.49
HOXD3P31249 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC11.97□□□□□ -0.49
HOXD3P31249 BCRP6-201ENST00000510112 632 ntBASIC11.97□□□□□ -0.49
HOXD3P31249 BCRP7-201ENST00000511549 544 ntBASIC11.97□□□□□ -0.49
HOXD3P31249 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC11.97□□□□□ -0.49
HOXD3P31249 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC11.97□□□□□ -0.49
HOXD3P31249 AL049840.4-201ENST00000602422 811 ntBASIC11.97□□□□□ -0.49
HOXD3P31249 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 GPR182-203ENST00000622922 591 ntBASIC11.97□□□□□ -0.49
HOXD3P31249 RPSAP52-203ENST00000622976 1023 ntBASIC11.97□□□□□ -0.49
HOXD3P31249 PAUPAR-201ENST00000630360 2965 ntBASIC11.97□□□□□ -0.49
HOXD3P31249 ABBA01031660.1-201ENST00000635219 756 ntBASIC11.97□□□□□ -0.49
HOXD3P31249 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC11.97□□□□□ -0.49
HOXD3P31249 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC11.97□□□□□ -0.49
HOXD3P31249 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC11.97□□□□□ -0.49
HOXD3P31249 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
HOXD3P31249 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXD3P31249 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
HOXD3P31249 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXD3P31249 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXD3P31249 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXD3P31249 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXD3P31249 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXD3P31249 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC11.96□□□□□ -0.49
HOXD3P31249 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXD3P31249 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXD3P31249 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC11.96□□□□□ -0.49
HOXD3P31249 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXD3P31249 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXD3P31249 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXD3P31249 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HOXD3P31249 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXD3P31249 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXD3P31249 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HOXD3P31249 STX1A-203ENST00000395155 783 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXD3P31249 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC11.96□□□□□ -0.49
HOXD3P31249 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC11.96□□□□□ -0.49
HOXD3P31249 RPL28-203ENST00000428193 573 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXD3P31249 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HOXD3P31249 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.49
HOXD3P31249 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC11.96□□□□□ -0.49
HOXD3P31249 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
HOXD3P31249 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HOXD3P31249 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC11.96□□□□□ -0.49
HOXD3P31249 RPL28-207ENST00000558815 616 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXD3P31249 AL359711.2-201ENST00000563105 872 ntBASIC11.96□□□□□ -0.49
HOXD3P31249 APRT-204ENST00000563655 709 ntTSL 5 BASIC11.96□□□□□ -0.49
HOXD3P31249 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC11.96□□□□□ -0.49
HOXD3P31249 MIR5189-201ENST00000577370 114 ntBASIC11.96□□□□□ -0.49
HOXD3P31249 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC11.96□□□□□ -0.49
HOXD3P31249 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC11.96□□□□□ -0.49
HOXD3P31249 UBL5-208ENST00000593087 320 ntTSL 3 BASIC11.96□□□□□ -0.49
HOXD3P31249 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC11.96□□□□□ -0.49
HOXD3P31249 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC11.96□□□□□ -0.49
HOXD3P31249 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HOXD3P31249 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC11.96□□□□□ -0.49
HOXD3P31249 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC11.96□□□□□ -0.49
HOXD3P31249 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC11.96□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms