Protein–RNA interactions for Protein: P11387

TOP1, DNA topoisomerase 1, humanhuman

Known RBP Predictions only

Length 765 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP1P11387 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP1P11387 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP1P11387 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP1P11387 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TOP1P11387 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP1P11387 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP1P11387 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC18.14■□□□□ 0.49
TOP1P11387 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP1P11387 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP1P11387 AC009090.5-201ENST00000624886 2285 ntBASIC18.14■□□□□ 0.49
TOP1P11387 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.14■□□□□ 0.49
TOP1P11387 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC18.13■□□□□ 0.49
TOP1P11387 AMT-224ENST00000635808 1610 ntTSL 5 BASIC18.13■□□□□ 0.49
TOP1P11387 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.13■□□□□ 0.49
TOP1P11387 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TOP1P11387 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TOP1P11387 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.13■□□□□ 0.49
TOP1P11387 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
TOP1P11387 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.13■□□□□ 0.49
TOP1P11387 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
TOP1P11387 PUDP-206ENST00000540122 825 ntTSL 2 BASIC18.13■□□□□ 0.49
TOP1P11387 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC18.13■□□□□ 0.49
TOP1P11387 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC18.13■□□□□ 0.49
TOP1P11387 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TOP1P11387 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TOP1P11387 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
TOP1P11387 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC18.13■□□□□ 0.49
TOP1P11387 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TOP1P11387 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
TOP1P11387 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TOP1P11387 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TOP1P11387 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 AGER-206ENST00000375070 1463 ntTSL 5 BASIC18.13■□□□□ 0.49
TOP1P11387 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP1P11387 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TOP1P11387 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC18.12■□□□□ 0.49
TOP1P11387 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.12■□□□□ 0.49
TOP1P11387 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
TOP1P11387 GK-202ENST00000378941 458 ntTSL 3 BASIC18.12■□□□□ 0.49
TOP1P11387 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.12■□□□□ 0.49
TOP1P11387 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC18.12■□□□□ 0.49
TOP1P11387 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.12■□□□□ 0.49
TOP1P11387 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC18.12■□□□□ 0.49
TOP1P11387 USP32P1-208ENST00000506594 1164 ntBASIC18.12■□□□□ 0.49
TOP1P11387 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
TOP1P11387 TDH-203ENST00000531764 1110 ntBASIC18.12■□□□□ 0.49
TOP1P11387 AP001063.1-201ENST00000568332 529 ntBASIC18.12■□□□□ 0.49
TOP1P11387 IFT20-206ENST00000578122 834 ntTSL 2 BASIC18.12■□□□□ 0.49
TOP1P11387 IFT20-208ENST00000578985 831 ntTSL 3 BASIC18.12■□□□□ 0.49
TOP1P11387 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC18.12■□□□□ 0.49
TOP1P11387 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.12■□□□□ 0.49
TOP1P11387 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.12■□□□□ 0.49
TOP1P11387 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC18.12■□□□□ 0.49
TOP1P11387 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.12■□□□□ 0.49
TOP1P11387 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.12■□□□□ 0.49
TOP1P11387 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.12■□□□□ 0.49
TOP1P11387 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.12■□□□□ 0.49
TOP1P11387 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 AL138799.1-201ENST00000448213 1675 ntBASIC18.12■□□□□ 0.49
TOP1P11387 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TOP1P11387 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TOP1P11387 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
TOP1P11387 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TOP1P11387 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TOP1P11387 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms