Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC007686.3-201ENST00000619017 3487 ntBASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 TMEM14DP-201ENST00000422205 345 ntBASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 RPL13P2-201ENST00000440687 659 ntBASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC006486.2-201ENST00000624246 2199 ntBASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 TOMM22P5-201ENST00000416399 439 ntBASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 KLF2P4-201ENST00000451959 1225 ntBASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 FAM86LP-201ENST00000478302 853 ntBASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 AL391069.4-201ENST00000609583 481 ntBASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 AL158212.4-201ENST00000624062 1286 ntBASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC018665.1-201ENST00000622927 1362 ntBASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TMX2-CTNND1H3BSU7 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC136621.1-201ENST00000624017 2304 ntBASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC015656.1-201ENST00000624209 3578 ntBASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 APOC3-202ENST00000375345 604 ntTSL 5 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 STX1A-203ENST00000395155 783 ntTSL 2 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms