Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 METTL26-204ENST00000397665 558 ntTSL 2 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 CDK4-206ENST00000549606 558 ntTSL 2 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 BRI3BPP1-201ENST00000594224 787 ntBASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 AC007431.3-201ENST00000623221 587 ntBASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 AL645728.2-202ENST00000641679 227 ntBASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 NFIC-211ENST00000641145 8399 ntBASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 TERF1P3-201ENST00000505638 1227 ntBASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 AP000845.1-201ENST00000581677 2131 ntBASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 AL391825.1-201ENST00000457671 1364 ntBASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 REXO1L4P-201ENST00000605109 1937 ntBASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMC4Q9NTJ3 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 LINC00528-201ENST00000600723 2160 ntBASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 AC104457.1-201ENST00000401024 814 ntBASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 AC104596.2-201ENST00000512793 793 ntBASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 AC026410.3-201ENST00000514280 936 ntBASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 AC190387.1-201ENST00000551683 408 ntBASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 AMT-232ENST00000636199 1546 ntTSL 5 BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SMC4Q9NTJ3 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms