Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.33■□□□□ 0.04
TRIM54Q9BYV2 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM54Q9BYV2 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.04
TRIM54Q9BYV2 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.33■□□□□ 0.04
TRIM54Q9BYV2 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM54Q9BYV2 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM54Q9BYV2 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM54Q9BYV2 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.33■□□□□ 0.04
TRIM54Q9BYV2 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
TRIM54Q9BYV2 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRIM54Q9BYV2 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 AC007292.2-201ENST00000593524 1812 ntBASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 C18orf15-201ENST00000623680 2534 ntBASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 AC097493.3-201ENST00000509725 367 ntBASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 AL512361.1-201ENST00000554200 418 ntBASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.32■□□□□ 0.04
TRIM54Q9BYV2 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 VMA21-202ENST00000370361 693 ntTSL 5 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 AC015922.1-201ENST00000421102 1152 ntBASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 TREML5P-201ENST00000421694 576 ntBASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 AC241585.1-201ENST00000433527 519 ntBASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 AC010336.2-201ENST00000564226 506 ntBASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 AC126365.1-201ENST00000578585 1514 ntBASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRIM54Q9BYV2 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms