Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
USP54Q70EL1 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC19.98■□□□□ 0.79
USP54Q70EL1 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USP54Q70EL1 AC006480.2-201ENST00000609770 1337 ntBASIC19.97■□□□□ 0.79
USP54Q70EL1 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP54Q70EL1 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP54Q70EL1 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP54Q70EL1 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC19.97■□□□□ 0.79
USP54Q70EL1 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC19.97■□□□□ 0.79
USP54Q70EL1 FGFR3P1-201ENST00000449999 601 ntBASIC19.97■□□□□ 0.79
USP54Q70EL1 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC19.97■□□□□ 0.79
USP54Q70EL1 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC19.97■□□□□ 0.79
USP54Q70EL1 MIR3188-201ENST00000583494 85 ntBASIC19.97■□□□□ 0.79
USP54Q70EL1 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP54Q70EL1 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC19.97■□□□□ 0.79
USP54Q70EL1 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC19.97■□□□□ 0.79
USP54Q70EL1 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC19.97■□□□□ 0.79
USP54Q70EL1 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP54Q70EL1 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP54Q70EL1 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
USP54Q70EL1 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
USP54Q70EL1 PCDHGB8P-201ENST00000502926 1973 ntBASIC19.97■□□□□ 0.79
USP54Q70EL1 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP54Q70EL1 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP54Q70EL1 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USP54Q70EL1 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.97■□□□□ 0.79
USP54Q70EL1 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19.97■□□□□ 0.79
USP54Q70EL1 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC19.97■□□□□ 0.79
USP54Q70EL1 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC19.97■□□□□ 0.79
USP54Q70EL1 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC19.97■□□□□ 0.79
USP54Q70EL1 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP54Q70EL1 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP54Q70EL1 OR2K2-202ENST00000374428 1038 ntBASIC19.97■□□□□ 0.79
USP54Q70EL1 LDHBP1-201ENST00000455730 1119 ntBASIC19.97■□□□□ 0.79
USP54Q70EL1 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC19.97■□□□□ 0.79
USP54Q70EL1 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC19.97■□□□□ 0.79
USP54Q70EL1 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC19.97■□□□□ 0.79
USP54Q70EL1 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC19.97■□□□□ 0.79
USP54Q70EL1 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC19.97■□□□□ 0.79
USP54Q70EL1 AL022334.2-201ENST00000610000 484 ntBASIC19.97■□□□□ 0.79
USP54Q70EL1 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
USP54Q70EL1 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC19.97■□□□□ 0.79
USP54Q70EL1 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USP54Q70EL1 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.97■□□□□ 0.79
USP54Q70EL1 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP54Q70EL1 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC19.96■□□□□ 0.79
USP54Q70EL1 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC19.96■□□□□ 0.79
USP54Q70EL1 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP54Q70EL1 TBC1D3J-201ENST00000620719 1426 ntBASIC19.96■□□□□ 0.79
USP54Q70EL1 AC144522.1-201ENST00000625111 1658 ntBASIC19.96■□□□□ 0.79
USP54Q70EL1 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP54Q70EL1 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC19.96■□□□□ 0.79
USP54Q70EL1 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC19.96■□□□□ 0.79
USP54Q70EL1 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP54Q70EL1 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP54Q70EL1 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
USP54Q70EL1 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
USP54Q70EL1 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
USP54Q70EL1 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC19.96■□□□□ 0.79
USP54Q70EL1 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
USP54Q70EL1 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC19.96■□□□□ 0.79
USP54Q70EL1 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC19.96■□□□□ 0.79
USP54Q70EL1 NOC2LP1-201ENST00000450578 752 ntBASIC19.96■□□□□ 0.79
USP54Q70EL1 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
USP54Q70EL1 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC19.96■□□□□ 0.79
USP54Q70EL1 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC19.96■□□□□ 0.79
USP54Q70EL1 PHBP15-201ENST00000574228 665 ntBASIC19.96■□□□□ 0.79
USP54Q70EL1 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC19.96■□□□□ 0.79
USP54Q70EL1 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC19.96■□□□□ 0.79
USP54Q70EL1 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC19.96■□□□□ 0.79
USP54Q70EL1 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP54Q70EL1 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP54Q70EL1 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP54Q70EL1 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USP54Q70EL1 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC19.96■□□□□ 0.79
USP54Q70EL1 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC19.96■□□□□ 0.79
USP54Q70EL1 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
USP54Q70EL1 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC19.95■□□□□ 0.78
USP54Q70EL1 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP54Q70EL1 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP54Q70EL1 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP54Q70EL1 TMBIM7P-202ENST00000641474 1516 ntBASIC19.95■□□□□ 0.78
USP54Q70EL1 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP54Q70EL1 NCR3-202ENST00000376071 541 ntTSL 5 BASIC19.95■□□□□ 0.78
USP54Q70EL1 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP54Q70EL1 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP54Q70EL1 RN7SL258P-201ENST00000478664 300 ntBASIC19.95■□□□□ 0.78
USP54Q70EL1 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
USP54Q70EL1 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC19.95■□□□□ 0.78
USP54Q70EL1 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC19.95■□□□□ 0.78
USP54Q70EL1 RPL17P45-201ENST00000586289 509 ntBASIC19.95■□□□□ 0.78
USP54Q70EL1 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP54Q70EL1 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC19.95■□□□□ 0.78
USP54Q70EL1 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP54Q70EL1 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP54Q70EL1 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP54Q70EL1 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC19.95■□□□□ 0.78
USP54Q70EL1 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
USP54Q70EL1 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP54Q70EL1 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms