Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATL3Q6DD88 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATL3Q6DD88 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ATL3Q6DD88 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
ATL3Q6DD88 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.62■□□□□ 0.41
ATL3Q6DD88 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.62■□□□□ 0.41
ATL3Q6DD88 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ATL3Q6DD88 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.62■□□□□ 0.41
ATL3Q6DD88 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.62■□□□□ 0.41
ATL3Q6DD88 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.62■□□□□ 0.41
ATL3Q6DD88 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.62■□□□□ 0.41
ATL3Q6DD88 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.62■□□□□ 0.41
ATL3Q6DD88 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATL3Q6DD88 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.62■□□□□ 0.41
ATL3Q6DD88 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.62■□□□□ 0.41
ATL3Q6DD88 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ATL3Q6DD88 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATL3Q6DD88 AC087499.5-201ENST00000452760 1342 ntBASIC17.62■□□□□ 0.41
ATL3Q6DD88 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATL3Q6DD88 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
ATL3Q6DD88 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ATL3Q6DD88 LILRP1-201ENST00000444199 1370 ntBASIC17.62■□□□□ 0.41
ATL3Q6DD88 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC17.62■□□□□ 0.41
ATL3Q6DD88 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATL3Q6DD88 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATL3Q6DD88 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATL3Q6DD88 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATL3Q6DD88 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.62■□□□□ 0.41
ATL3Q6DD88 PCDHA3-202ENST00000532566 4594 ntBASIC17.62■□□□□ 0.41
ATL3Q6DD88 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC17.62■□□□□ 0.41
ATL3Q6DD88 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.62■□□□□ 0.41
ATL3Q6DD88 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATL3Q6DD88 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATL3Q6DD88 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC17.61■□□□□ 0.41
ATL3Q6DD88 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATL3Q6DD88 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
ATL3Q6DD88 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ATL3Q6DD88 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
ATL3Q6DD88 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATL3Q6DD88 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATL3Q6DD88 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.61■□□□□ 0.41
ATL3Q6DD88 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ATL3Q6DD88 AP000347.1-202ENST00000435868 847 ntBASIC17.61■□□□□ 0.41
ATL3Q6DD88 CNN2P2-201ENST00000443536 909 ntBASIC17.61■□□□□ 0.41
ATL3Q6DD88 CNN2P3-201ENST00000450201 906 ntBASIC17.61■□□□□ 0.41
ATL3Q6DD88 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ATL3Q6DD88 AC015911.4-201ENST00000588022 1070 ntBASIC17.61■□□□□ 0.41
ATL3Q6DD88 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATL3Q6DD88 AC027612.4-201ENST00000605371 583 ntBASIC17.61■□□□□ 0.41
ATL3Q6DD88 AL136317.3-201ENST00000618497 906 ntBASIC17.61■□□□□ 0.41
ATL3Q6DD88 AC073592.8-201ENST00000624126 511 ntBASIC17.61■□□□□ 0.41
ATL3Q6DD88 AL109936.8-201ENST00000641772 604 ntBASIC17.61■□□□□ 0.41
ATL3Q6DD88 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
ATL3Q6DD88 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATL3Q6DD88 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
ATL3Q6DD88 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
ATL3Q6DD88 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC17.61■□□□□ 0.41
ATL3Q6DD88 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATL3Q6DD88 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC17.61■□□□□ 0.41
ATL3Q6DD88 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATL3Q6DD88 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ATL3Q6DD88 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATL3Q6DD88 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
ATL3Q6DD88 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ATL3Q6DD88 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 SUN1-204ENST00000403868 978 ntTSL 2 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ATL3Q6DD88 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.6■□□□□ 0.41
ATL3Q6DD88 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms