Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 AC008738.7-201ENST00000609744 511 ntBASIC18.49■□□□□ 0.55
RNF20Q5VTR2 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.49■□□□□ 0.55
RNF20Q5VTR2 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF20Q5VTR2 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF20Q5VTR2 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
RNF20Q5VTR2 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF20Q5VTR2 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF20Q5VTR2 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC18.49■□□□□ 0.55
RNF20Q5VTR2 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF20Q5VTR2 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF20Q5VTR2 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF20Q5VTR2 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC18.49■□□□□ 0.55
RNF20Q5VTR2 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF20Q5VTR2 ZBED1P1-201ENST00000502364 1930 ntBASIC18.49■□□□□ 0.55
RNF20Q5VTR2 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.49■□□□□ 0.55
RNF20Q5VTR2 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF20Q5VTR2 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.49■□□□□ 0.55
RNF20Q5VTR2 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 RERG-209ENST00000546331 1383 ntTSL 2 BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 PMS2P2-201ENST00000425039 1128 ntBASIC18.48■□□□□ 0.55
RNF20Q5VTR2 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 AC011467.4-201ENST00000594891 528 ntBASIC18.48■□□□□ 0.55
RNF20Q5VTR2 AL390955.2-201ENST00000603032 514 ntBASIC18.48■□□□□ 0.55
RNF20Q5VTR2 AL158212.4-201ENST00000624062 1286 ntBASIC18.48■□□□□ 0.55
RNF20Q5VTR2 AC004840.1-201ENST00000636359 365 ntBASIC18.48■□□□□ 0.55
RNF20Q5VTR2 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
RNF20Q5VTR2 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 AC093214.1-201ENST00000511688 1107 ntBASIC18.47■□□□□ 0.55
RNF20Q5VTR2 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RNF20Q5VTR2 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RNF20Q5VTR2 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms