Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 FAM8A3P-201ENST00000427218 844 ntBASIC13.92□□□□□ -0.18
CCDC58Q4VC31 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 EEF1DP4-201ENST00000446006 880 ntBASIC13.92□□□□□ -0.18
CCDC58Q4VC31 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 AL773604.1-201ENST00000617417 272 ntBASIC13.92□□□□□ -0.18
CCDC58Q4VC31 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 WASH3P-207ENST00000560956 1394 ntBASIC13.92□□□□□ -0.18
CCDC58Q4VC31 FO538757.1-201ENST00000623083 1397 ntBASIC13.92□□□□□ -0.18
CCDC58Q4VC31 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
CCDC58Q4VC31 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 KRT8P37-201ENST00000451609 1420 ntBASIC13.91□□□□□ -0.18
CCDC58Q4VC31 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 PPIE-208ENST00000470213 927 ntTSL 3 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 UNC93B7-201ENST00000509439 705 ntBASIC13.91□□□□□ -0.18
CCDC58Q4VC31 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 AL031008.1-201ENST00000619963 541 ntBASIC13.91□□□□□ -0.18
CCDC58Q4VC31 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC58Q4VC31 LINC01230-201ENST00000625222 3017 ntBASIC13.9□□□□□ -0.18
CCDC58Q4VC31 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC58Q4VC31 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC58Q4VC31 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC58Q4VC31 AC025580.3-201ENST00000617932 1424 ntBASIC13.9□□□□□ -0.18
CCDC58Q4VC31 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC58Q4VC31 AJ011931.1-201ENST00000618749 2492 ntBASIC13.9□□□□□ -0.18
CCDC58Q4VC31 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC58Q4VC31 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC58Q4VC31 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.9□□□□□ -0.18
CCDC58Q4VC31 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC58Q4VC31 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC58Q4VC31 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CCDC58Q4VC31 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC58Q4VC31 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms