Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 FAM58DP-201ENST00000428076 619 ntBASIC15.24■□□□□ 0.03
PKNOX1P55347 HIST3H2BA-201ENST00000436555 524 ntBASIC15.24■□□□□ 0.03
PKNOX1P55347 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.24■□□□□ 0.03
PKNOX1P55347 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.24■□□□□ 0.03
PKNOX1P55347 YBX1P5-201ENST00000509441 847 ntBASIC15.24■□□□□ 0.03
PKNOX1P55347 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.24■□□□□ 0.03
PKNOX1P55347 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.24■□□□□ 0.03
PKNOX1P55347 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.24■□□□□ 0.03
PKNOX1P55347 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.24■□□□□ 0.03
PKNOX1P55347 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.24■□□□□ 0.03
PKNOX1P55347 AC007967.4-201ENST00000614700 386 ntBASIC15.24■□□□□ 0.03
PKNOX1P55347 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.24■□□□□ 0.03
PKNOX1P55347 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.24■□□□□ 0.03
PKNOX1P55347 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
PKNOX1P55347 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.24■□□□□ 0.03
PKNOX1P55347 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.24■□□□□ 0.03
PKNOX1P55347 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.24■□□□□ 0.03
PKNOX1P55347 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
PKNOX1P55347 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.24■□□□□ 0.03
PKNOX1P55347 AL035456.1-201ENST00000456064 1369 ntBASIC15.24■□□□□ 0.03
PKNOX1P55347 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
PKNOX1P55347 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
PKNOX1P55347 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.23■□□□□ 0.03
PKNOX1P55347 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.23■□□□□ 0.03
PKNOX1P55347 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.23■□□□□ 0.03
PKNOX1P55347 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.23■□□□□ 0.03
PKNOX1P55347 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.23■□□□□ 0.03
PKNOX1P55347 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.23■□□□□ 0.03
PKNOX1P55347 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
PKNOX1P55347 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.23■□□□□ 0.03
PKNOX1P55347 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.23■□□□□ 0.03
PKNOX1P55347 AC003101.2-201ENST00000612557 442 ntBASIC15.23■□□□□ 0.03
PKNOX1P55347 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
PKNOX1P55347 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.23■□□□□ 0.03
PKNOX1P55347 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.23■□□□□ 0.03
PKNOX1P55347 ABR-228ENST00000574437 3196 ntTSL 5 BASIC15.23■□□□□ 0.03
PKNOX1P55347 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 MROH4P-201ENST00000431302 1578 ntBASIC15.23■□□□□ 0.03
PKNOX1P55347 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.23■□□□□ 0.03
PKNOX1P55347 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 KRT8P12-202ENST00000472924 1397 ntBASIC15.23■□□□□ 0.03
PKNOX1P55347 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.23■□□□□ 0.03
PKNOX1P55347 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PKNOX1P55347 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.22■□□□□ 0.03
PKNOX1P55347 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PKNOX1P55347 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PKNOX1P55347 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PKNOX1P55347 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC15.22■□□□□ 0.03
PKNOX1P55347 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
PKNOX1P55347 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
PKNOX1P55347 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.22■□□□□ 0.03
PKNOX1P55347 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
PKNOX1P55347 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PKNOX1P55347 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms