Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.2■□□□□ 0.02
CXCL12P48061 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL12P48061 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.2■□□□□ 0.02
CXCL12P48061 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL12P48061 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL12P48061 AP000593.2-201ENST00000542775 1433 ntBASIC15.2■□□□□ 0.02
CXCL12P48061 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL12P48061 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL12P48061 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CXCL12P48061 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CXCL12P48061 HNRNPA1P41-201ENST00000397777 928 ntBASIC15.2■□□□□ 0.02
CXCL12P48061 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC15.2■□□□□ 0.02
CXCL12P48061 FGFR3P1-201ENST00000449999 601 ntBASIC15.2■□□□□ 0.02
CXCL12P48061 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.2■□□□□ 0.02
CXCL12P48061 AC103988.2-201ENST00000561804 725 ntBASIC15.2■□□□□ 0.02
CXCL12P48061 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.2■□□□□ 0.02
CXCL12P48061 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC15.2■□□□□ 0.02
CXCL12P48061 AC004466.1-201ENST00000599515 1080 ntBASIC15.2■□□□□ 0.02
CXCL12P48061 AL358472.3-201ENST00000608147 415 ntBASIC15.2■□□□□ 0.02
CXCL12P48061 RN7SL736P-201ENST00000613111 269 ntBASIC15.2■□□□□ 0.02
CXCL12P48061 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC15.2■□□□□ 0.02
CXCL12P48061 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC15.2■□□□□ 0.02
CXCL12P48061 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.2■□□□□ 0.02
CXCL12P48061 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CXCL12P48061 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL12P48061 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.2■□□□□ 0.02
CXCL12P48061 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL12P48061 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL12P48061 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL12P48061 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CXCL12P48061 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CXCL12P48061 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CXCL12P48061 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
CXCL12P48061 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CXCL12P48061 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.19■□□□□ 0.02
CXCL12P48061 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.19■□□□□ 0.02
CXCL12P48061 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CXCL12P48061 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.19■□□□□ 0.02
CXCL12P48061 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
CXCL12P48061 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.19■□□□□ 0.02
CXCL12P48061 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.19■□□□□ 0.02
CXCL12P48061 AL355334.1-201ENST00000417713 215 ntBASIC15.19■□□□□ 0.02
CXCL12P48061 ISCA2P1-201ENST00000425548 448 ntBASIC15.19■□□□□ 0.02
CXCL12P48061 PDIA3P2-201ENST00000428073 158 ntBASIC15.19■□□□□ 0.02
CXCL12P48061 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.19■□□□□ 0.02
CXCL12P48061 FAM58BP-201ENST00000439056 645 ntBASIC15.19■□□□□ 0.02
CXCL12P48061 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC15.19■□□□□ 0.02
CXCL12P48061 RPL18P13-201ENST00000478088 569 ntBASIC15.19■□□□□ 0.02
CXCL12P48061 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC15.19■□□□□ 0.02
CXCL12P48061 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CXCL12P48061 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.19■□□□□ 0.02
CXCL12P48061 PGAM1P5-201ENST00000548011 764 ntBASIC15.19■□□□□ 0.02
CXCL12P48061 DUX4L47-201ENST00000566374 394 ntBASIC15.19■□□□□ 0.02
CXCL12P48061 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
CXCL12P48061 AC002472.3-201ENST00000640124 621 ntBASIC15.19■□□□□ 0.02
CXCL12P48061 HLA-C-210ENST00000640219 976 ntBASIC15.19■□□□□ 0.02
CXCL12P48061 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CXCL12P48061 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.19■□□□□ 0.02
CXCL12P48061 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.19■□□□□ 0.02
CXCL12P48061 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CXCL12P48061 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CXCL12P48061 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 AL596087.1-201ENST00000400979 1969 ntBASIC15.18■□□□□ 0.02
CXCL12P48061 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.18■□□□□ 0.02
CXCL12P48061 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.18■□□□□ 0.02
CXCL12P48061 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.18■□□□□ 0.02
CXCL12P48061 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CXCL12P48061 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC15.18■□□□□ 0.02
CXCL12P48061 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms