Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC11.99□□□□□ -0.49
HOXD3P31249 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 USP32P1-208ENST00000506594 1164 ntBASIC11.99□□□□□ -0.49
HOXD3P31249 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
HOXD3P31249 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC11.99□□□□□ -0.49
HOXD3P31249 SLC25A47P1-201ENST00000531577 414 ntBASIC11.99□□□□□ -0.49
HOXD3P31249 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 AC015910.1-201ENST00000579400 975 ntBASIC11.99□□□□□ -0.49
HOXD3P31249 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC11.99□□□□□ -0.49
HOXD3P31249 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC11.99□□□□□ -0.49
HOXD3P31249 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC11.99□□□□□ -0.49
HOXD3P31249 AC233724.13-201ENST00000598383 410 ntBASIC11.99□□□□□ -0.49
HOXD3P31249 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC11.99□□□□□ -0.49
HOXD3P31249 PFAS-212ENST00000625942 396 ntTSL 5 BASIC11.99□□□□□ -0.49
HOXD3P31249 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC11.99□□□□□ -0.49
HOXD3P31249 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
HOXD3P31249 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
HOXD3P31249 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC11.99□□□□□ -0.49
HOXD3P31249 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
HOXD3P31249 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC11.99□□□□□ -0.49
HOXD3P31249 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC11.99□□□□□ -0.49
HOXD3P31249 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC11.99□□□□□ -0.49
HOXD3P31249 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
HOXD3P31249 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC11.99□□□□□ -0.49
HOXD3P31249 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC11.99□□□□□ -0.49
HOXD3P31249 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC11.99□□□□□ -0.49
HOXD3P31249 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HOXD3P31249 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXD3P31249 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC11.98□□□□□ -0.49
HOXD3P31249 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
HOXD3P31249 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXD3P31249 TP73-209ENST00000603362 1668 ntTSL 5 BASIC11.98□□□□□ -0.49
HOXD3P31249 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC11.98□□□□□ -0.49
HOXD3P31249 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 PDIA3P1-201ENST00000471856 1510 ntBASIC11.98□□□□□ -0.49
HOXD3P31249 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXD3P31249 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
HOXD3P31249 NSL1-201ENST00000366976 722 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXD3P31249 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
HOXD3P31249 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXD3P31249 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC11.98□□□□□ -0.49
HOXD3P31249 AL162726.2-201ENST00000438986 1017 ntBASIC11.98□□□□□ -0.49
HOXD3P31249 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXD3P31249 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 KLF2P4-201ENST00000451959 1225 ntBASIC11.98□□□□□ -0.49
HOXD3P31249 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC11.98□□□□□ -0.49
HOXD3P31249 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC11.98□□□□□ -0.49
HOXD3P31249 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC11.98□□□□□ -0.49
HOXD3P31249 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXD3P31249 PACS1-203ENST00000524815 628 ntTSL 4 BASIC11.98□□□□□ -0.49
HOXD3P31249 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC11.98□□□□□ -0.49
HOXD3P31249 FAM8A2P-201ENST00000528813 1142 ntBASIC11.98□□□□□ -0.49
HOXD3P31249 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC11.98□□□□□ -0.49
HOXD3P31249 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC11.98□□□□□ -0.49
HOXD3P31249 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC11.98□□□□□ -0.49
HOXD3P31249 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXD3P31249 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC11.98□□□□□ -0.49
HOXD3P31249 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC11.98□□□□□ -0.49
HOXD3P31249 AC000095.1-201ENST00000603208 874 ntBASIC11.98□□□□□ -0.49
HOXD3P31249 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC11.98□□□□□ -0.49
HOXD3P31249 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC11.98□□□□□ -0.49
HOXD3P31249 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
HOXD3P31249 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXD3P31249 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
HOXD3P31249 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXD3P31249 DKFZP434H168-201ENST00000567381 1905 ntBASIC11.98□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms