Protein–RNA interactions for Protein: P12035

KRT3, Keratin, type II cytoskeletal 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT3P12035 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
KRT3P12035 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
KRT3P12035 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.33■□□□□ 0.2
KRT3P12035 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
KRT3P12035 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
KRT3P12035 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 TNRC18P2-201ENST00000417666 2714 ntBASIC16.32■□□□□ 0.2
KRT3P12035 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.32■□□□□ 0.2
KRT3P12035 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.32■□□□□ 0.2
KRT3P12035 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
KRT3P12035 AL589987.1-201ENST00000453380 819 ntBASIC16.32■□□□□ 0.2
KRT3P12035 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.32■□□□□ 0.2
KRT3P12035 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 RNA5SP421-201ENST00000516864 134 ntBASIC16.32■□□□□ 0.2
KRT3P12035 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.32■□□□□ 0.2
KRT3P12035 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.32■□□□□ 0.2
KRT3P12035 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.32■□□□□ 0.2
KRT3P12035 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
KRT3P12035 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
KRT3P12035 AC000095.1-201ENST00000603208 874 ntBASIC16.32■□□□□ 0.2
KRT3P12035 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.32■□□□□ 0.2
KRT3P12035 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.32■□□□□ 0.2
KRT3P12035 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC16.32■□□□□ 0.2
KRT3P12035 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC16.32■□□□□ 0.2
KRT3P12035 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
KRT3P12035 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
KRT3P12035 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.31■□□□□ 0.2
KRT3P12035 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.31■□□□□ 0.2
KRT3P12035 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.31■□□□□ 0.2
KRT3P12035 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.31■□□□□ 0.2
KRT3P12035 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
KRT3P12035 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.31■□□□□ 0.2
KRT3P12035 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.31■□□□□ 0.2
KRT3P12035 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.31■□□□□ 0.2
KRT3P12035 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
KRT3P12035 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.31■□□□□ 0.2
KRT3P12035 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.31■□□□□ 0.2
KRT3P12035 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.31■□□□□ 0.2
KRT3P12035 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.31■□□□□ 0.2
KRT3P12035 AL158212.4-201ENST00000624062 1286 ntBASIC16.31■□□□□ 0.2
KRT3P12035 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.31■□□□□ 0.2
KRT3P12035 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
KRT3P12035 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 AGAP7P-201ENST00000582299 2062 ntBASIC16.31■□□□□ 0.2
KRT3P12035 AGAP14-201ENST00000624701 2060 ntBASIC16.31■□□□□ 0.2
KRT3P12035 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
KRT3P12035 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.31■□□□□ 0.2
KRT3P12035 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
KRT3P12035 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 MROH4P-201ENST00000431302 1578 ntBASIC16.3■□□□□ 0.2
KRT3P12035 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
KRT3P12035 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.3■□□□□ 0.2
KRT3P12035 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 186 ms