Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC15.62■□□□□ 0.09
VIMP08670 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.62■□□□□ 0.09
VIMP08670 AL691432.1-201ENST00000596308 1422 ntBASIC15.62■□□□□ 0.09
VIMP08670 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.62■□□□□ 0.09
VIMP08670 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.62■□□□□ 0.09
VIMP08670 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.62■□□□□ 0.09
VIMP08670 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC15.62■□□□□ 0.09
VIMP08670 CICP8-201ENST00000455800 2813 ntBASIC15.62■□□□□ 0.09
VIMP08670 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
VIMP08670 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.62■□□□□ 0.09
VIMP08670 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
VIMP08670 LAGE3P1-201ENST00000425356 484 ntBASIC15.62■□□□□ 0.09
VIMP08670 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 AC008667.4-201ENST00000607370 168 ntBASIC15.62■□□□□ 0.09
VIMP08670 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.62■□□□□ 0.09
VIMP08670 AL355877.3-201ENST00000622820 899 ntBASIC15.62■□□□□ 0.09
VIMP08670 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.62■□□□□ 0.09
VIMP08670 AP001267.2-201ENST00000532619 2086 ntBASIC15.62■□□□□ 0.09
VIMP08670 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
VIMP08670 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 FUK-202ENST00000378912 3925 ntTSL 2 BASIC15.62■□□□□ 0.09
VIMP08670 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.62■□□□□ 0.09
VIMP08670 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
VIMP08670 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 AL359881.3-201ENST00000602640 1721 ntBASIC15.62■□□□□ 0.09
VIMP08670 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 PEG13-201ENST00000631594 5667 ntBASIC15.62■□□□□ 0.09
VIMP08670 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.62■□□□□ 0.09
VIMP08670 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.62■□□□□ 0.09
VIMP08670 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC15.62■□□□□ 0.09
VIMP08670 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VIMP08670 AC018529.2-202ENST00000611482 3087 ntBASIC15.62■□□□□ 0.09
VIMP08670 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
VIMP08670 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.61■□□□□ 0.09
VIMP08670 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
VIMP08670 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
VIMP08670 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
VIMP08670 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
VIMP08670 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.61■□□□□ 0.09
VIMP08670 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC15.61■□□□□ 0.09
VIMP08670 CICP11-201ENST00000434745 2827 ntBASIC15.61■□□□□ 0.09
VIMP08670 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
VIMP08670 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
VIMP08670 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC15.61■□□□□ 0.09
VIMP08670 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.61■□□□□ 0.09
VIMP08670 FAM185BP-201ENST00000443595 716 ntBASIC15.61■□□□□ 0.09
VIMP08670 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.61■□□□□ 0.09
VIMP08670 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC15.61■□□□□ 0.09
VIMP08670 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC15.61■□□□□ 0.09
VIMP08670 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC15.61■□□□□ 0.09
VIMP08670 AL031432.2-201ENST00000566714 459 ntBASIC15.61■□□□□ 0.09
VIMP08670 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC15.61■□□□□ 0.09
VIMP08670 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.61■□□□□ 0.09
VIMP08670 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 AL928711.1-201ENST00000570165 459 ntBASIC15.61■□□□□ 0.09
VIMP08670 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC15.61■□□□□ 0.09
VIMP08670 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC15.61■□□□□ 0.09
VIMP08670 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC15.61■□□□□ 0.09
VIMP08670 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC15.61■□□□□ 0.09
VIMP08670 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
VIMP08670 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC15.61■□□□□ 0.09
VIMP08670 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VIMP08670 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
VIMP08670 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC15.6■□□□□ 0.09
VIMP08670 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms