Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.84■□□□□ 0.45
CTDNEP1O95476 AL138799.1-201ENST00000448213 1675 ntBASIC17.83■□□□□ 0.45
CTDNEP1O95476 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
CTDNEP1O95476 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.45
CTDNEP1O95476 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CTDNEP1O95476 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CTDNEP1O95476 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CTDNEP1O95476 AC018529.2-202ENST00000611482 3087 ntBASIC17.83■□□□□ 0.45
CTDNEP1O95476 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC17.83■□□□□ 0.45
CTDNEP1O95476 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CTDNEP1O95476 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CTDNEP1O95476 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CTDNEP1O95476 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 RNA5SP421-201ENST00000516864 134 ntBASIC17.83■□□□□ 0.44
CTDNEP1O95476 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CTDNEP1O95476 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CTDNEP1O95476 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CTDNEP1O95476 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CTDNEP1O95476 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CTDNEP1O95476 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 FAM45BP-202ENST00000592932 1624 ntBASIC17.83■□□□□ 0.44
CTDNEP1O95476 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC17.83■□□□□ 0.44
CTDNEP1O95476 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.44
CTDNEP1O95476 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 AC004066.1-201ENST00000502488 802 ntBASIC17.82■□□□□ 0.44
CTDNEP1O95476 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 CHCHD2P3-201ENST00000603038 451 ntBASIC17.82■□□□□ 0.44
CTDNEP1O95476 AC099568.2-201ENST00000609194 695 ntBASIC17.82■□□□□ 0.44
CTDNEP1O95476 AC232323.1-201ENST00000540724 2099 ntBASIC17.82■□□□□ 0.44
CTDNEP1O95476 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 AL158070.2-201ENST00000623713 1621 ntBASIC17.82■□□□□ 0.44
CTDNEP1O95476 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 MTHFR-210ENST00000641407 2387 ntBASIC17.82■□□□□ 0.44
CTDNEP1O95476 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CTDNEP1O95476 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CTDNEP1O95476 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CTDNEP1O95476 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.81■□□□□ 0.44
CTDNEP1O95476 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms