Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
RTN3O95197 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.32■□□□□ 0.2
RTN3O95197 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
RTN3O95197 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.32■□□□□ 0.2
RTN3O95197 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
RTN3O95197 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.32■□□□□ 0.2
RTN3O95197 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 TNRC18P2-201ENST00000417666 2714 ntBASIC16.32■□□□□ 0.2
RTN3O95197 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.32■□□□□ 0.2
RTN3O95197 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 AC127383.1-201ENST00000444697 1800 ntBASIC16.32■□□□□ 0.2
RTN3O95197 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.32■□□□□ 0.2
RTN3O95197 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.32■□□□□ 0.2
RTN3O95197 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.32■□□□□ 0.2
RTN3O95197 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
RTN3O95197 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.32■□□□□ 0.2
RTN3O95197 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 AC009486.1-201ENST00000569860 813 ntBASIC16.32■□□□□ 0.2
RTN3O95197 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.32■□□□□ 0.2
RTN3O95197 AP005117.1-202ENST00000581724 1908 ntBASIC16.32■□□□□ 0.2
RTN3O95197 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.32■□□□□ 0.2
RTN3O95197 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.32■□□□□ 0.2
RTN3O95197 AC008735.3-201ENST00000596646 500 ntBASIC16.32■□□□□ 0.2
RTN3O95197 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
RTN3O95197 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.32■□□□□ 0.2
RTN3O95197 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.32■□□□□ 0.2
RTN3O95197 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.32■□□□□ 0.2
RTN3O95197 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RTN3O95197 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.32■□□□□ 0.2
RTN3O95197 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
RTN3O95197 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
RTN3O95197 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.31■□□□□ 0.2
RTN3O95197 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.31■□□□□ 0.2
RTN3O95197 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
RTN3O95197 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 AP003680.1-201ENST00000598970 3660 ntBASIC16.31■□□□□ 0.2
RTN3O95197 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.31■□□□□ 0.2
RTN3O95197 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.31■□□□□ 0.2
RTN3O95197 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.31■□□□□ 0.2
RTN3O95197 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.31■□□□□ 0.2
RTN3O95197 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
RTN3O95197 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.31■□□□□ 0.2
RTN3O95197 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
RTN3O95197 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
RTN3O95197 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.31■□□□□ 0.2
RTN3O95197 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RTN3O95197 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 GAPDHP40-201ENST00000505218 1006 ntBASIC16.31■□□□□ 0.2
RTN3O95197 TDH-203ENST00000531764 1110 ntBASIC16.31■□□□□ 0.2
RTN3O95197 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.31■□□□□ 0.2
RTN3O95197 PTP4A1P2-201ENST00000546033 454 ntBASIC16.31■□□□□ 0.2
RTN3O95197 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.31■□□□□ 0.2
RTN3O95197 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.31■□□□□ 0.2
RTN3O95197 AP001063.1-201ENST00000568332 529 ntBASIC16.31■□□□□ 0.2
RTN3O95197 MIR5189-201ENST00000577370 114 ntBASIC16.31■□□□□ 0.2
RTN3O95197 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.31■□□□□ 0.2
RTN3O95197 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RTN3O95197 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.31■□□□□ 0.2
RTN3O95197 RPSAP52-203ENST00000622976 1023 ntBASIC16.31■□□□□ 0.2
RTN3O95197 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.31■□□□□ 0.2
RTN3O95197 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
RTN3O95197 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC16.31■□□□□ 0.2
RTN3O95197 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC16.31■□□□□ 0.2
RTN3O95197 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTN3O95197 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms