Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
FOXN3O00409 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
FOXN3O00409 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXN3O00409 PMS2P2-201ENST00000425039 1128 ntBASIC16.55■□□□□ 0.24
FOXN3O00409 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.55■□□□□ 0.24
FOXN3O00409 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXN3O00409 AC093214.1-201ENST00000511688 1107 ntBASIC16.55■□□□□ 0.24
FOXN3O00409 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXN3O00409 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXN3O00409 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXN3O00409 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.55■□□□□ 0.24
FOXN3O00409 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.55■□□□□ 0.24
FOXN3O00409 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.55■□□□□ 0.24
FOXN3O00409 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXN3O00409 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
FOXN3O00409 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
FOXN3O00409 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
FOXN3O00409 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXN3O00409 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXN3O00409 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.54■□□□□ 0.24
FOXN3O00409 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.54■□□□□ 0.24
FOXN3O00409 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.54■□□□□ 0.24
FOXN3O00409 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.54■□□□□ 0.24
FOXN3O00409 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC16.54■□□□□ 0.24
FOXN3O00409 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.54■□□□□ 0.24
FOXN3O00409 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.54■□□□□ 0.24
FOXN3O00409 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.54■□□□□ 0.24
FOXN3O00409 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.54■□□□□ 0.24
FOXN3O00409 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.54■□□□□ 0.24
FOXN3O00409 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.54■□□□□ 0.24
FOXN3O00409 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC16.54■□□□□ 0.24
FOXN3O00409 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.54■□□□□ 0.24
FOXN3O00409 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.54■□□□□ 0.24
FOXN3O00409 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 AC012508.2-201ENST00000567613 1472 ntBASIC16.54■□□□□ 0.24
FOXN3O00409 AL513477.1-201ENST00000602865 2407 ntBASIC16.54■□□□□ 0.24
FOXN3O00409 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXN3O00409 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.53■□□□□ 0.24
FOXN3O00409 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 AC099063.4-201ENST00000641099 1602 ntBASIC16.53■□□□□ 0.24
FOXN3O00409 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC16.53■□□□□ 0.24
FOXN3O00409 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
FOXN3O00409 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.53■□□□□ 0.24
FOXN3O00409 BASP1P1-201ENST00000430708 665 ntBASIC16.53■□□□□ 0.24
FOXN3O00409 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.53■□□□□ 0.24
FOXN3O00409 AC104794.3-201ENST00000566840 1248 ntBASIC16.53■□□□□ 0.24
FOXN3O00409 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
FOXN3O00409 AC011467.4-201ENST00000594891 528 ntBASIC16.53■□□□□ 0.24
FOXN3O00409 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
FOXN3O00409 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.53■□□□□ 0.24
FOXN3O00409 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.53■□□□□ 0.24
FOXN3O00409 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.53■□□□□ 0.24
FOXN3O00409 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.53■□□□□ 0.24
FOXN3O00409 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.53■□□□□ 0.24
FOXN3O00409 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXN3O00409 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms