Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 AL512361.1-201ENST00000554200 418 ntBASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 AC015911.4-201ENST00000588022 1070 ntBASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 AL138828.2-201ENST00000615812 383 ntBASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 CICP24-201ENST00000605464 2705 ntBASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 AC013726.1-201ENST00000563747 2285 ntBASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
HIF3AQ9Y2N7 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 LINC00528-201ENST00000600723 2160 ntBASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 AL139400.1-201ENST00000366220 510 ntBASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 KRT18P13-201ENST00000400056 1290 ntBASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 TOMM22P5-201ENST00000416399 439 ntBASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 RN7SL618P-201ENST00000477850 296 ntBASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 AC010336.2-201ENST00000564226 506 ntBASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 AC074044.1-201ENST00000609673 707 ntBASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 Metazoa_SRP.96-201ENST00000621315 318 ntBASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 FAM45BP-202ENST00000592932 1624 ntBASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.01□□□□□ -0.17
HIF3AQ9Y2N7 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14□□□□□ -0.17
HIF3AQ9Y2N7 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms