Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 AL645933.1-201ENST00000440087 609 ntBASIC19.4■□□□□ 0.7
SCN11AQ9UI33 CFL1-214ENST00000534769 758 ntTSL 2 BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 VPS18-202ENST00000558474 873 ntTSL 3 BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 AC128714.1-201ENST00000637035 887 ntBASIC19.4■□□□□ 0.7
SCN11AQ9UI33 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SCN11AQ9UI33 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SCN11AQ9UI33 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SCN11AQ9UI33 MIR33B-201ENST00000385104 96 ntBASIC19.39■□□□□ 0.7
SCN11AQ9UI33 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC19.39■□□□□ 0.7
SCN11AQ9UI33 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC19.39■□□□□ 0.7
SCN11AQ9UI33 FOS-206ENST00000555347 1280 ntTSL 2 BASIC19.39■□□□□ 0.7
SCN11AQ9UI33 MIR3907-201ENST00000579424 151 ntBASIC19.39■□□□□ 0.7
SCN11AQ9UI33 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.7
SCN11AQ9UI33 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
SCN11AQ9UI33 AP003680.1-201ENST00000598970 3660 ntBASIC19.39■□□□□ 0.7
SCN11AQ9UI33 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC19.39■□□□□ 0.7
SCN11AQ9UI33 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 RN7SKP214-201ENST00000364208 315 ntBASIC19.39■□□□□ 0.69
SCN11AQ9UI33 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 CEP164P1-201ENST00000455142 418 ntBASIC19.39■□□□□ 0.69
SCN11AQ9UI33 TUBB8P8-201ENST00000458717 1058 ntBASIC19.39■□□□□ 0.69
SCN11AQ9UI33 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 IRF3-215ENST00000596822 823 ntTSL 3 BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 AL132994.2-201ENST00000603120 687 ntBASIC19.39■□□□□ 0.69
SCN11AQ9UI33 MEG3_2.1-201ENST00000611456 105 ntBASIC19.39■□□□□ 0.69
SCN11AQ9UI33 AL157813.1-201ENST00000612996 587 ntBASIC19.39■□□□□ 0.69
SCN11AQ9UI33 AC004923.1-202ENST00000642106 209 ntBASIC19.39■□□□□ 0.69
SCN11AQ9UI33 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC19.39■□□□□ 0.69
SCN11AQ9UI33 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 FAM58BP-201ENST00000439056 645 ntBASIC19.38■□□□□ 0.69
SCN11AQ9UI33 AL353637.1-201ENST00000451571 732 ntBASIC19.38■□□□□ 0.69
SCN11AQ9UI33 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 YRDCP1-201ENST00000621419 643 ntBASIC19.38■□□□□ 0.69
SCN11AQ9UI33 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 KRT8P21-201ENST00000430398 1491 ntBASIC19.38■□□□□ 0.69
SCN11AQ9UI33 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 AMT-239ENST00000636865 1914 ntTSL 5 BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN11AQ9UI33 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SCN11AQ9UI33 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC19.37■□□□□ 0.69
SCN11AQ9UI33 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SCN11AQ9UI33 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SCN11AQ9UI33 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SCN11AQ9UI33 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms