Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
MKS1Q9NXB0 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
MKS1Q9NXB0 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
MKS1Q9NXB0 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
MKS1Q9NXB0 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
MKS1Q9NXB0 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
MKS1Q9NXB0 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
MKS1Q9NXB0 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
MKS1Q9NXB0 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.27■□□□□ 0.03
MKS1Q9NXB0 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
MKS1Q9NXB0 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
MKS1Q9NXB0 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
MKS1Q9NXB0 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
MKS1Q9NXB0 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.27■□□□□ 0.03
MKS1Q9NXB0 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
MKS1Q9NXB0 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 AC055811.4-201ENST00000624039 1754 ntBASIC15.26■□□□□ 0.03
MKS1Q9NXB0 AC005840.4-201ENST00000541242 2494 ntBASIC15.26■□□□□ 0.03
MKS1Q9NXB0 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 SLC25A1P1-201ENST00000528351 927 ntBASIC15.26■□□□□ 0.03
MKS1Q9NXB0 KRT126P-201ENST00000549467 1181 ntBASIC15.26■□□□□ 0.03
MKS1Q9NXB0 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 RN7SL828P-201ENST00000607615 303 ntBASIC15.26■□□□□ 0.03
MKS1Q9NXB0 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 C20orf181-201ENST00000623918 480 ntBASIC15.26■□□□□ 0.03
MKS1Q9NXB0 C1R-201ENST00000535233 2211 ntTSL 2 BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.26■□□□□ 0.03
MKS1Q9NXB0 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MKS1Q9NXB0 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 AC015922.1-201ENST00000421102 1152 ntBASIC15.25■□□□□ 0.03
MKS1Q9NXB0 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 KRT18P64-201ENST00000434946 1219 ntBASIC15.25■□□□□ 0.03
MKS1Q9NXB0 RPL13P2-201ENST00000440687 659 ntBASIC15.25■□□□□ 0.03
MKS1Q9NXB0 KRT18P43-201ENST00000469825 1281 ntBASIC15.25■□□□□ 0.03
MKS1Q9NXB0 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
MKS1Q9NXB0 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms