Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.11■□□□□ 0.49
NUP88Q99567 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
NUP88Q99567 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
NUP88Q99567 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NUP88Q99567 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP88Q99567 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NUP88Q99567 LBX2-201ENST00000341396 886 ntTSL 3 BASIC18.11■□□□□ 0.49
NUP88Q99567 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC18.11■□□□□ 0.49
NUP88Q99567 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP88Q99567 BAATP1-201ENST00000412284 1225 ntBASIC18.11■□□□□ 0.49
NUP88Q99567 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC18.11■□□□□ 0.49
NUP88Q99567 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NUP88Q99567 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NUP88Q99567 MFF-223ENST00000524634 647 ntTSL 2 BASIC18.11■□□□□ 0.49
NUP88Q99567 AP001582.1-201ENST00000525856 295 ntBASIC18.11■□□□□ 0.49
NUP88Q99567 AP005482.1-201ENST00000563722 1273 ntBASIC18.11■□□□□ 0.49
NUP88Q99567 AL033527.4-201ENST00000641026 673 ntBASIC18.11■□□□□ 0.49
NUP88Q99567 AC134312.5-201ENST00000568031 1313 ntBASIC18.11■□□□□ 0.49
NUP88Q99567 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP88Q99567 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC18.11■□□□□ 0.49
NUP88Q99567 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NUP88Q99567 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NUP88Q99567 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
NUP88Q99567 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.11■□□□□ 0.49
NUP88Q99567 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP88Q99567 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
NUP88Q99567 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NUP88Q99567 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
NUP88Q99567 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.11■□□□□ 0.49
NUP88Q99567 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP88Q99567 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
NUP88Q99567 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP88Q99567 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.1■□□□□ 0.49
NUP88Q99567 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP88Q99567 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
NUP88Q99567 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
NUP88Q99567 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
NUP88Q99567 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.1■□□□□ 0.49
NUP88Q99567 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP88Q99567 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP88Q99567 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC18.1■□□□□ 0.49
NUP88Q99567 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC18.1■□□□□ 0.49
NUP88Q99567 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC18.1■□□□□ 0.49
NUP88Q99567 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP88Q99567 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP88Q99567 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NUP88Q99567 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
NUP88Q99567 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP88Q99567 AC005229.1-201ENST00000392885 409 ntBASIC18.1■□□□□ 0.49
NUP88Q99567 AC092933.1-201ENST00000393644 945 ntBASIC18.1■□□□□ 0.49
NUP88Q99567 BOLA2P3-201ENST00000404566 256 ntBASIC18.1■□□□□ 0.49
NUP88Q99567 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NUP88Q99567 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC18.1■□□□□ 0.49
NUP88Q99567 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC18.1■□□□□ 0.49
NUP88Q99567 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.1■□□□□ 0.49
NUP88Q99567 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
NUP88Q99567 AP001063.1-201ENST00000568332 529 ntBASIC18.1■□□□□ 0.49
NUP88Q99567 IFT20-206ENST00000578122 834 ntTSL 2 BASIC18.1■□□□□ 0.49
NUP88Q99567 IFT20-208ENST00000578985 831 ntTSL 3 BASIC18.1■□□□□ 0.49
NUP88Q99567 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC18.1■□□□□ 0.49
NUP88Q99567 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC18.1■□□□□ 0.49
NUP88Q99567 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC18.1■□□□□ 0.49
NUP88Q99567 AC103702.1-201ENST00000548801 2630 ntBASIC18.1■□□□□ 0.49
NUP88Q99567 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP88Q99567 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
NUP88Q99567 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP88Q99567 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NUP88Q99567 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.1■□□□□ 0.49
NUP88Q99567 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP88Q99567 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
NUP88Q99567 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NUP88Q99567 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
NUP88Q99567 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.09■□□□□ 0.49
NUP88Q99567 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP88Q99567 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
NUP88Q99567 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC18.09■□□□□ 0.49
NUP88Q99567 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.09■□□□□ 0.49
NUP88Q99567 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NUP88Q99567 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NUP88Q99567 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP88Q99567 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC18.09■□□□□ 0.49
NUP88Q99567 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC18.09■□□□□ 0.49
NUP88Q99567 AC012441.1-201ENST00000446669 685 ntBASIC18.09■□□□□ 0.49
NUP88Q99567 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
NUP88Q99567 FTH1P14-201ENST00000482930 551 ntBASIC18.09■□□□□ 0.49
NUP88Q99567 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC18.09■□□□□ 0.49
NUP88Q99567 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC18.09■□□□□ 0.49
NUP88Q99567 RPL28-206ENST00000558752 671 ntTSL 3 BASIC18.09■□□□□ 0.49
NUP88Q99567 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NUP88Q99567 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
NUP88Q99567 AC244669.2-201ENST00000612320 853 ntBASIC18.09■□□□□ 0.49
NUP88Q99567 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP88Q99567 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
NUP88Q99567 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP88Q99567 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP88Q99567 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP88Q99567 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
NUP88Q99567 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC18.09■□□□□ 0.49
NUP88Q99567 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP88Q99567 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms