Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC24.78■■□□□ 1.56
IFT140Q96RY7 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC24.78■■□□□ 1.56
IFT140Q96RY7 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC24.78■■□□□ 1.56
IFT140Q96RY7 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC24.78■■□□□ 1.56
IFT140Q96RY7 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC24.78■■□□□ 1.56
IFT140Q96RY7 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC24.78■■□□□ 1.56
IFT140Q96RY7 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
IFT140Q96RY7 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
IFT140Q96RY7 FAM90A21P-201ENST00000510875 1396 ntBASIC24.78■■□□□ 1.56
IFT140Q96RY7 FAM90A15P-201ENST00000514465 1395 ntBASIC24.78■■□□□ 1.56
IFT140Q96RY7 FAM90A6P-201ENST00000515148 1394 ntBASIC24.78■■□□□ 1.56
IFT140Q96RY7 FAM90A16P-201ENST00000526662 1395 ntBASIC24.78■■□□□ 1.56
IFT140Q96RY7 FAM90A9P-201ENST00000527940 1395 ntBASIC24.78■■□□□ 1.56
IFT140Q96RY7 FAM90A5P-201ENST00000528738 1395 ntBASIC24.78■■□□□ 1.56
IFT140Q96RY7 FAM90A14P-201ENST00000530386 1395 ntBASIC24.78■■□□□ 1.56
IFT140Q96RY7 FAM90A13P-201ENST00000534703 1395 ntBASIC24.78■■□□□ 1.56
IFT140Q96RY7 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC24.78■■□□□ 1.56
IFT140Q96RY7 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC24.77■■□□□ 1.56
IFT140Q96RY7 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
IFT140Q96RY7 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC24.77■■□□□ 1.56
IFT140Q96RY7 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC24.77■■□□□ 1.56
IFT140Q96RY7 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC24.77■■□□□ 1.56
IFT140Q96RY7 AC138701.2-201ENST00000553634 226 ntBASIC24.77■■□□□ 1.56
IFT140Q96RY7 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
IFT140Q96RY7 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC24.77■■□□□ 1.56
IFT140Q96RY7 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
IFT140Q96RY7 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
IFT140Q96RY7 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC24.77■■□□□ 1.56
IFT140Q96RY7 PGR-209ENST00000617858 2816 ntTSL 5 BASIC24.77■■□□□ 1.56
IFT140Q96RY7 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
IFT140Q96RY7 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
IFT140Q96RY7 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
IFT140Q96RY7 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC24.77■■□□□ 1.56
IFT140Q96RY7 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
IFT140Q96RY7 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
IFT140Q96RY7 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC24.77■■□□□ 1.56
IFT140Q96RY7 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC24.77■■□□□ 1.56
IFT140Q96RY7 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC24.77■■□□□ 1.56
IFT140Q96RY7 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC24.77■■□□□ 1.56
IFT140Q96RY7 AP000322.3-201ENST00000608665 388 ntBASIC24.77■■□□□ 1.56
IFT140Q96RY7 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
IFT140Q96RY7 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
IFT140Q96RY7 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
IFT140Q96RY7 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
IFT140Q96RY7 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
IFT140Q96RY7 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC24.76■■□□□ 1.55
IFT140Q96RY7 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
IFT140Q96RY7 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC24.76■■□□□ 1.55
IFT140Q96RY7 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
IFT140Q96RY7 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC24.76■■□□□ 1.55
IFT140Q96RY7 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC24.76■■□□□ 1.55
IFT140Q96RY7 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC24.76■■□□□ 1.55
IFT140Q96RY7 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC24.76■■□□□ 1.55
IFT140Q96RY7 AL672207.1-201ENST00000328462 1570 ntBASIC24.76■■□□□ 1.55
IFT140Q96RY7 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
IFT140Q96RY7 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC24.76■■□□□ 1.55
IFT140Q96RY7 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
IFT140Q96RY7 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
IFT140Q96RY7 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC24.76■■□□□ 1.55
IFT140Q96RY7 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
IFT140Q96RY7 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC24.76■■□□□ 1.55
IFT140Q96RY7 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC24.76■■□□□ 1.55
IFT140Q96RY7 MIR2392-201ENST00000584881 84 ntBASIC24.76■■□□□ 1.55
IFT140Q96RY7 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC24.76■■□□□ 1.55
IFT140Q96RY7 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC24.76■■□□□ 1.55
IFT140Q96RY7 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC24.75■■□□□ 1.55
IFT140Q96RY7 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
IFT140Q96RY7 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
IFT140Q96RY7 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
IFT140Q96RY7 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
IFT140Q96RY7 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC24.75■■□□□ 1.55
IFT140Q96RY7 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC24.75■■□□□ 1.55
IFT140Q96RY7 SLC9A7P1-202ENST00000556476 2239 ntBASIC24.75■■□□□ 1.55
IFT140Q96RY7 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC24.75■■□□□ 1.55
IFT140Q96RY7 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
IFT140Q96RY7 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC24.75■■□□□ 1.55
IFT140Q96RY7 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
IFT140Q96RY7 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
IFT140Q96RY7 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
IFT140Q96RY7 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC24.75■■□□□ 1.55
IFT140Q96RY7 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC24.75■■□□□ 1.55
IFT140Q96RY7 GCOM2-201ENST00000509133 1104 ntBASIC24.75■■□□□ 1.55
IFT140Q96RY7 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC24.75■■□□□ 1.55
IFT140Q96RY7 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC24.75■■□□□ 1.55
IFT140Q96RY7 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC24.75■■□□□ 1.55
IFT140Q96RY7 FTLP5-201ENST00000586853 534 ntBASIC24.75■■□□□ 1.55
IFT140Q96RY7 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC24.75■■□□□ 1.55
IFT140Q96RY7 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
IFT140Q96RY7 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
IFT140Q96RY7 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC24.75■■□□□ 1.55
IFT140Q96RY7 AHCYP4-201ENST00000419201 1315 ntBASIC24.75■■□□□ 1.55
IFT140Q96RY7 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
IFT140Q96RY7 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
IFT140Q96RY7 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC24.74■■□□□ 1.55
IFT140Q96RY7 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC24.74■■□□□ 1.55
IFT140Q96RY7 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
IFT140Q96RY7 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
IFT140Q96RY7 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
IFT140Q96RY7 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC24.74■■□□□ 1.55
IFT140Q96RY7 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms