Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 REXO1L1P-202ENST00000608646 1974 ntBASIC16.85■□□□□ 0.29
VPS52Q8N1B4 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 C1QBPP1-201ENST00000400117 770 ntBASIC16.84■□□□□ 0.29
VPS52Q8N1B4 HAUS4P1-201ENST00000406739 1145 ntBASIC16.84■□□□□ 0.29
VPS52Q8N1B4 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 AC099336.1-201ENST00000417053 1171 ntBASIC16.84■□□□□ 0.29
VPS52Q8N1B4 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 AC120045.2-201ENST00000567334 178 ntBASIC16.84■□□□□ 0.29
VPS52Q8N1B4 AL450472.2-201ENST00000603663 1156 ntBASIC16.84■□□□□ 0.29
VPS52Q8N1B4 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS52Q8N1B4 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
VPS52Q8N1B4 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS52Q8N1B4 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
VPS52Q8N1B4 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.29
VPS52Q8N1B4 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
VPS52Q8N1B4 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
VPS52Q8N1B4 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 AL355864.2-201ENST00000447420 863 ntBASIC16.83■□□□□ 0.28
VPS52Q8N1B4 CSF2RBP1-201ENST00000447905 391 ntBASIC16.83■□□□□ 0.28
VPS52Q8N1B4 VDAC1P7-201ENST00000462417 847 ntBASIC16.83■□□□□ 0.28
VPS52Q8N1B4 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms