Protein–RNA interactions for Protein: Q5S007

LRRK2, Leucine-rich repeat serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 2,527 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK2Q5S007 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRRK2Q5S007 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
LRRK2Q5S007 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 HNRNPA1P58-201ENST00000403629 610 ntBASIC13.16□□□□□ -0.3
LRRK2Q5S007 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 AC012441.2-201ENST00000444843 739 ntBASIC13.16□□□□□ -0.3
LRRK2Q5S007 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 KLF2P1-201ENST00000447438 1042 ntBASIC13.16□□□□□ -0.3
LRRK2Q5S007 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 AL353622.2-201ENST00000605846 425 ntBASIC13.16□□□□□ -0.3
LRRK2Q5S007 AL451007.2-201ENST00000632004 563 ntBASIC13.16□□□□□ -0.3
LRRK2Q5S007 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 AL109809.1-201ENST00000418979 1367 ntBASIC13.16□□□□□ -0.3
LRRK2Q5S007 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 PUDPP3-201ENST00000445368 636 ntBASIC13.16□□□□□ -0.3
LRRK2Q5S007 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 LINC00634-202ENST00000505157 222 ntBASIC13.16□□□□□ -0.3
LRRK2Q5S007 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 AC005041.3-201ENST00000606287 649 ntBASIC13.16□□□□□ -0.3
LRRK2Q5S007 MIR6769A-201ENST00000617340 73 ntBASIC13.16□□□□□ -0.3
LRRK2Q5S007 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 AC090502.4-201ENST00000551714 1386 ntBASIC13.16□□□□□ -0.3
LRRK2Q5S007 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC13.16□□□□□ -0.3
LRRK2Q5S007 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LRRK2Q5S007 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRRK2Q5S007 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRRK2Q5S007 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRRK2Q5S007 MESTP3-201ENST00000503460 968 ntBASIC13.15□□□□□ -0.3
LRRK2Q5S007 AC022616.1-201ENST00000518688 554 ntBASIC13.15□□□□□ -0.3
LRRK2Q5S007 PMEL-214ENST00000550447 901 ntTSL 3 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 CLUHP2-201ENST00000426660 1303 ntBASIC13.15□□□□□ -0.3
LRRK2Q5S007 KRT18P9-201ENST00000604826 1300 ntBASIC13.15□□□□□ -0.3
LRRK2Q5S007 AL008718.2-201ENST00000609206 1313 ntBASIC13.15□□□□□ -0.3
LRRK2Q5S007 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRRK2Q5S007 AC244394.1-201ENST00000435000 1665 ntBASIC13.15□□□□□ -0.3
LRRK2Q5S007 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRRK2Q5S007 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRRK2Q5S007 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRRK2Q5S007 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRRK2Q5S007 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRRK2Q5S007 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRRK2Q5S007 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRRK2Q5S007 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 PGR-209ENST00000617858 2816 ntTSL 5 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 BAK1P1-201ENST00000317045 636 ntBASIC13.15□□□□□ -0.3
LRRK2Q5S007 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 AL592076.1-201ENST00000424448 303 ntBASIC13.15□□□□□ -0.3
LRRK2Q5S007 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 AC011471.3-201ENST00000623576 402 ntBASIC13.15□□□□□ -0.3
LRRK2Q5S007 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC13.15□□□□□ -0.3
LRRK2Q5S007 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRRK2Q5S007 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
LRRK2Q5S007 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
LRRK2Q5S007 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms