Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FNTAP2-201ENST00000430308 634 ntBASIC13.31□□□□□ -0.28
ABCA4P78363 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC13.31□□□□□ -0.28
ABCA4P78363 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 ARTN-209ENST00000479128 471 ntTSL 3 BASIC13.31□□□□□ -0.28
ABCA4P78363 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC13.31□□□□□ -0.28
ABCA4P78363 CHMP4BP1-201ENST00000556017 588 ntBASIC13.31□□□□□ -0.28
ABCA4P78363 NAT9-222ENST00000583476 583 ntTSL 3 BASIC13.31□□□□□ -0.28
ABCA4P78363 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC13.31□□□□□ -0.28
ABCA4P78363 GPR39-203ENST00000622084 900 ntTSL 5 BASIC13.31□□□□□ -0.28
ABCA4P78363 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC13.31□□□□□ -0.28
ABCA4P78363 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.31□□□□□ -0.28
ABCA4P78363 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.31□□□□□ -0.28
ABCA4P78363 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC13.31□□□□□ -0.28
ABCA4P78363 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC13.31□□□□□ -0.28
ABCA4P78363 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC13.31□□□□□ -0.28
ABCA4P78363 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
ABCA4P78363 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC13.3□□□□□ -0.28
ABCA4P78363 OLR1-203ENST00000432556 950 ntTSL 2 BASIC13.3□□□□□ -0.28
ABCA4P78363 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC13.3□□□□□ -0.28
ABCA4P78363 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC13.3□□□□□ -0.28
ABCA4P78363 AL590640.2-201ENST00000457038 527 ntBASIC13.3□□□□□ -0.28
ABCA4P78363 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC13.3□□□□□ -0.28
ABCA4P78363 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC13.3□□□□□ -0.28
ABCA4P78363 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
ABCA4P78363 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 AC015818.8-201ENST00000587907 1519 ntBASIC13.3□□□□□ -0.28
ABCA4P78363 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
ABCA4P78363 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
ABCA4P78363 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC13.3□□□□□ -0.28
ABCA4P78363 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC13.3□□□□□ -0.28
ABCA4P78363 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC13.3□□□□□ -0.28
ABCA4P78363 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.3□□□□□ -0.28
ABCA4P78363 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
ABCA4P78363 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC13.3□□□□□ -0.28
ABCA4P78363 POM121L10P-201ENST00000436994 1285 ntBASIC13.3□□□□□ -0.28
ABCA4P78363 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.3□□□□□ -0.28
ABCA4P78363 HSPB1P2-201ENST00000448722 546 ntBASIC13.3□□□□□ -0.28
ABCA4P78363 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.3□□□□□ -0.28
ABCA4P78363 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
ABCA4P78363 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.3□□□□□ -0.28
ABCA4P78363 MIR5572-201ENST00000583188 137 ntBASIC13.3□□□□□ -0.28
ABCA4P78363 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC13.3□□□□□ -0.28
ABCA4P78363 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC13.3□□□□□ -0.28
ABCA4P78363 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
ABCA4P78363 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.3□□□□□ -0.28
ABCA4P78363 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
ABCA4P78363 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.3□□□□□ -0.28
ABCA4P78363 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
ABCA4P78363 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
ABCA4P78363 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.29□□□□□ -0.28
ABCA4P78363 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA4P78363 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA4P78363 IGF1-203ENST00000392904 761 ntTSL 5 BASIC13.29□□□□□ -0.28
ABCA4P78363 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA4P78363 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA4P78363 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA4P78363 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
ABCA4P78363 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
ABCA4P78363 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.29□□□□□ -0.28
ABCA4P78363 AC097724.1-201ENST00000609581 426 ntBASIC13.29□□□□□ -0.28
ABCA4P78363 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.29□□□□□ -0.28
ABCA4P78363 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA4P78363 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA4P78363 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
ABCA4P78363 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms