Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA3P55318 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA3P55318 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA3P55318 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.54
FOXA3P55318 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA3P55318 AC097359.2-201ENST00000604992 2389 ntBASIC11.71□□□□□ -0.54
FOXA3P55318 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA3P55318 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC11.71□□□□□ -0.54
FOXA3P55318 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA3P55318 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC11.71□□□□□ -0.54
FOXA3P55318 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA3P55318 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA3P55318 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.54
FOXA3P55318 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA3P55318 AL359183.1-201ENST00000623796 2132 ntBASIC11.71□□□□□ -0.54
FOXA3P55318 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA3P55318 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA3P55318 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA3P55318 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA3P55318 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA3P55318 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
FOXA3P55318 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA3P55318 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 AL691432.1-201ENST00000596308 1422 ntBASIC11.7□□□□□ -0.54
FOXA3P55318 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA3P55318 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
FOXA3P55318 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA3P55318 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC11.7□□□□□ -0.54
FOXA3P55318 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
FOXA3P55318 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
FOXA3P55318 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
FOXA3P55318 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA3P55318 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
FOXA3P55318 EMD-201ENST00000369835 966 ntTSL 3 BASIC11.7□□□□□ -0.54
FOXA3P55318 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 RPL5P21-201ENST00000404620 815 ntBASIC11.7□□□□□ -0.54
FOXA3P55318 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC11.7□□□□□ -0.54
FOXA3P55318 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC11.7□□□□□ -0.54
FOXA3P55318 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC11.7□□□□□ -0.54
FOXA3P55318 PPOX-219ENST00000544598 813 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA3P55318 RIN3-211ENST00000557762 517 ntTSL 3 BASIC11.7□□□□□ -0.54
FOXA3P55318 CYB561-216ENST00000582297 897 ntTSL 3 BASIC11.7□□□□□ -0.54
FOXA3P55318 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC11.7□□□□□ -0.54
FOXA3P55318 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA3P55318 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC11.7□□□□□ -0.54
FOXA3P55318 MTDHP3-201ENST00000594186 672 ntBASIC11.7□□□□□ -0.54
FOXA3P55318 AC138894.3-201ENST00000603787 634 ntBASIC11.7□□□□□ -0.54
FOXA3P55318 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 AC116407.4-201ENST00000623319 1061 ntBASIC11.7□□□□□ -0.54
FOXA3P55318 AL645728.2-201ENST00000641974 660 ntBASIC11.7□□□□□ -0.54
FOXA3P55318 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
FOXA3P55318 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA3P55318 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA3P55318 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC11.7□□□□□ -0.54
FOXA3P55318 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 TP73-211ENST00000604074 4806 ntTSL 5 BASIC11.7□□□□□ -0.54
FOXA3P55318 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
FOXA3P55318 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA3P55318 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC11.7□□□□□ -0.54
FOXA3P55318 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC11.69□□□□□ -0.54
FOXA3P55318 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 AL359881.3-201ENST00000602640 1721 ntBASIC11.69□□□□□ -0.54
FOXA3P55318 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
FOXA3P55318 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC11.69□□□□□ -0.54
FOXA3P55318 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC11.69□□□□□ -0.54
FOXA3P55318 ACE3P-201ENST00000423435 1973 ntBASIC11.69□□□□□ -0.54
FOXA3P55318 PCDHGB8P-201ENST00000502926 1973 ntBASIC11.69□□□□□ -0.54
FOXA3P55318 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms