Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CX3CR1P49238 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CX3CR1P49238 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.67□□□□□ -0.22
CX3CR1P49238 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.67□□□□□ -0.22
CX3CR1P49238 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.67□□□□□ -0.22
CX3CR1P49238 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
CX3CR1P49238 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.67□□□□□ -0.22
CX3CR1P49238 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CX3CR1P49238 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CX3CR1P49238 AC084364.1-201ENST00000551967 1556 ntBASIC13.66□□□□□ -0.22
CX3CR1P49238 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.66□□□□□ -0.22
CX3CR1P49238 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.66□□□□□ -0.22
CX3CR1P49238 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC13.66□□□□□ -0.22
CX3CR1P49238 AMT-224ENST00000635808 1610 ntTSL 5 BASIC13.66□□□□□ -0.22
CX3CR1P49238 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
CX3CR1P49238 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CX3CR1P49238 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
CX3CR1P49238 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 PPP6R2P1-201ENST00000450880 1275 ntBASIC13.66□□□□□ -0.22
CX3CR1P49238 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 SLED1-202ENST00000512051 380 ntBASIC13.66□□□□□ -0.22
CX3CR1P49238 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC13.66□□□□□ -0.22
CX3CR1P49238 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC13.66□□□□□ -0.22
CX3CR1P49238 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC13.66□□□□□ -0.22
CX3CR1P49238 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC13.66□□□□□ -0.22
CX3CR1P49238 AGAP7P-201ENST00000582299 2062 ntBASIC13.66□□□□□ -0.22
CX3CR1P49238 AGAP14-201ENST00000624701 2060 ntBASIC13.66□□□□□ -0.22
CX3CR1P49238 GRK6P1-201ENST00000400595 1711 ntBASIC13.66□□□□□ -0.22
CX3CR1P49238 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.66□□□□□ -0.22
CX3CR1P49238 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
CX3CR1P49238 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CX3CR1P49238 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC13.66□□□□□ -0.22
CX3CR1P49238 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
CX3CR1P49238 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.66□□□□□ -0.22
CX3CR1P49238 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CX3CR1P49238 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CR1P49238 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.65□□□□□ -0.22
CX3CR1P49238 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.65□□□□□ -0.22
CX3CR1P49238 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC13.65□□□□□ -0.22
CX3CR1P49238 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.65□□□□□ -0.22
CX3CR1P49238 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
CX3CR1P49238 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.65□□□□□ -0.22
CX3CR1P49238 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.65□□□□□ -0.22
CX3CR1P49238 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC13.65□□□□□ -0.22
CX3CR1P49238 KRT18P13-201ENST00000400056 1290 ntBASIC13.65□□□□□ -0.22
CX3CR1P49238 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.65□□□□□ -0.22
CX3CR1P49238 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC13.65□□□□□ -0.22
CX3CR1P49238 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC13.65□□□□□ -0.22
CX3CR1P49238 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC13.65□□□□□ -0.22
CX3CR1P49238 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC13.65□□□□□ -0.22
CX3CR1P49238 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC13.65□□□□□ -0.22
CX3CR1P49238 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC13.65□□□□□ -0.22
CX3CR1P49238 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC13.65□□□□□ -0.22
CX3CR1P49238 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC13.65□□□□□ -0.22
CX3CR1P49238 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC13.65□□□□□ -0.22
CX3CR1P49238 AL033527.5-202ENST00000641632 1098 ntBASIC13.65□□□□□ -0.22
CX3CR1P49238 AC005089.1-201ENST00000619486 2241 ntBASIC13.65□□□□□ -0.22
CX3CR1P49238 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CR1P49238 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 183.7 ms