Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.2■□□□□ 0.02
SHMT2P34897 AC093726.1-201ENST00000608064 963 ntBASIC15.2■□□□□ 0.02
SHMT2P34897 AL391069.4-201ENST00000609583 481 ntBASIC15.2■□□□□ 0.02
SHMT2P34897 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.2■□□□□ 0.02
SHMT2P34897 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.2■□□□□ 0.02
SHMT2P34897 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.2■□□□□ 0.02
SHMT2P34897 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.2■□□□□ 0.02
SHMT2P34897 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
SHMT2P34897 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.2■□□□□ 0.02
SHMT2P34897 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
SHMT2P34897 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.19■□□□□ 0.02
SHMT2P34897 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.19■□□□□ 0.02
SHMT2P34897 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.19■□□□□ 0.02
SHMT2P34897 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 AL035633.1-201ENST00000406139 838 ntBASIC15.19■□□□□ 0.02
SHMT2P34897 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.19■□□□□ 0.02
SHMT2P34897 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.19■□□□□ 0.02
SHMT2P34897 COX20P2-201ENST00000452636 358 ntBASIC15.19■□□□□ 0.02
SHMT2P34897 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.19■□□□□ 0.02
SHMT2P34897 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.19■□□□□ 0.02
SHMT2P34897 AC104596.2-201ENST00000512793 793 ntBASIC15.19■□□□□ 0.02
SHMT2P34897 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.19■□□□□ 0.02
SHMT2P34897 TP53TG3HP-202ENST00000569755 579 ntBASIC15.19■□□□□ 0.02
SHMT2P34897 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC15.19■□□□□ 0.02
SHMT2P34897 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.19■□□□□ 0.02
SHMT2P34897 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.19■□□□□ 0.02
SHMT2P34897 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
SHMT2P34897 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.19■□□□□ 0.02
SHMT2P34897 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
SHMT2P34897 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
SHMT2P34897 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
SHMT2P34897 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.19■□□□□ 0.02
SHMT2P34897 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHMT2P34897 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.18■□□□□ 0.02
SHMT2P34897 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHMT2P34897 AL121723.1-201ENST00000445194 1519 ntBASIC15.18■□□□□ 0.02
SHMT2P34897 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHMT2P34897 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHMT2P34897 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHMT2P34897 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
SHMT2P34897 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHMT2P34897 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.18■□□□□ 0.02
SHMT2P34897 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
SHMT2P34897 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SHMT2P34897 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.18■□□□□ 0.02
SHMT2P34897 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.18■□□□□ 0.02
SHMT2P34897 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHMT2P34897 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.18■□□□□ 0.02
SHMT2P34897 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHMT2P34897 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHMT2P34897 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.18■□□□□ 0.02
SHMT2P34897 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHMT2P34897 RN7SL399P-201ENST00000471648 279 ntBASIC15.18■□□□□ 0.02
SHMT2P34897 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.18■□□□□ 0.02
SHMT2P34897 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SHMT2P34897 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.18■□□□□ 0.02
SHMT2P34897 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.18■□□□□ 0.02
SHMT2P34897 AC015910.1-201ENST00000579400 975 ntBASIC15.18■□□□□ 0.02
SHMT2P34897 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.18■□□□□ 0.02
SHMT2P34897 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.18■□□□□ 0.02
SHMT2P34897 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.18■□□□□ 0.02
SHMT2P34897 AC007431.3-201ENST00000623221 587 ntBASIC15.18■□□□□ 0.02
SHMT2P34897 AL358472.5-202ENST00000641448 1267 ntBASIC15.18■□□□□ 0.02
SHMT2P34897 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SHMT2P34897 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.18■□□□□ 0.02
SHMT2P34897 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.18■□□□□ 0.02
SHMT2P34897 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SHMT2P34897 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SHMT2P34897 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
SHMT2P34897 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHMT2P34897 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHMT2P34897 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.17■□□□□ 0.02
SHMT2P34897 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SHMT2P34897 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms