Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 NME2-201ENST00000393183 568 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 HMGN1P19-201ENST00000436976 333 ntBASIC11.87□□□□□ -0.51
HLA-DMBP28068 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 FXR1-221ENST00000491674 365 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 AC093520.2-201ENST00000561830 333 ntBASIC11.87□□□□□ -0.51
HLA-DMBP28068 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 AC084121.4-201ENST00000641598 221 ntBASIC11.87□□□□□ -0.51
HLA-DMBP28068 AF228730.8-201ENST00000642140 221 ntBASIC11.87□□□□□ -0.51
HLA-DMBP28068 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
HLA-DMBP28068 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC11.87□□□□□ -0.51
HLA-DMBP28068 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 AC139749.1-202ENST00000617529 3139 ntBASIC11.86□□□□□ -0.51
HLA-DMBP28068 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 RBM39-205ENST00000397370 612 ntTSL 2 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 AC136604.1-201ENST00000418535 575 ntBASIC11.86□□□□□ -0.51
HLA-DMBP28068 AL353705.2-201ENST00000428243 662 ntBASIC11.86□□□□□ -0.51
HLA-DMBP28068 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 HLA-J-203ENST00000494367 1087 ntBASIC11.86□□□□□ -0.51
HLA-DMBP28068 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
HLA-DMBP28068 AC009093.7-201ENST00000623853 1223 ntBASIC11.86□□□□□ -0.51
HLA-DMBP28068 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
HLA-DMBP28068 GPI-205ENST00000586425 1799 ntTSL 5 BASIC11.86□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 350.4 ms