Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CHMP2AO43633 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.4■□□□□ 0.38
CHMP2AO43633 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
CHMP2AO43633 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.39■□□□□ 0.38
CHMP2AO43633 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
CHMP2AO43633 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.38
CHMP2AO43633 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
CHMP2AO43633 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.38
CHMP2AO43633 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CHMP2AO43633 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
CHMP2AO43633 AC063926.3-201ENST00000624734 5658 ntBASIC17.39■□□□□ 0.38
CHMP2AO43633 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.39■□□□□ 0.38
CHMP2AO43633 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.39■□□□□ 0.37
CHMP2AO43633 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CHMP2AO43633 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP2AO43633 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP2AO43633 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP2AO43633 SSR4P1-203ENST00000599569 2260 ntBASIC17.39■□□□□ 0.37
CHMP2AO43633 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.39■□□□□ 0.37
CHMP2AO43633 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CHMP2AO43633 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP2AO43633 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CHMP2AO43633 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.39■□□□□ 0.37
CHMP2AO43633 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.39■□□□□ 0.37
CHMP2AO43633 GAPDHP40-201ENST00000505218 1006 ntBASIC17.39■□□□□ 0.37
CHMP2AO43633 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC17.39■□□□□ 0.37
CHMP2AO43633 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC17.39■□□□□ 0.37
CHMP2AO43633 CLUHP6-201ENST00000580789 941 ntBASIC17.39■□□□□ 0.37
CHMP2AO43633 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
CHMP2AO43633 AC008735.3-201ENST00000596646 500 ntBASIC17.39■□□□□ 0.37
CHMP2AO43633 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP2AO43633 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP2AO43633 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.39■□□□□ 0.37
CHMP2AO43633 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP2AO43633 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP2AO43633 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP2AO43633 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP2AO43633 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP2AO43633 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
CHMP2AO43633 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP2AO43633 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CHMP2AO43633 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CHMP2AO43633 MSTO2P-201ENST00000314835 1709 ntBASIC17.38■□□□□ 0.37
CHMP2AO43633 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
CHMP2AO43633 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC17.38■□□□□ 0.37
CHMP2AO43633 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.38■□□□□ 0.37
CHMP2AO43633 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CHMP2AO43633 PGR-210ENST00000619228 3038 ntTSL 5 BASIC17.38■□□□□ 0.37
CHMP2AO43633 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CHMP2AO43633 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CHMP2AO43633 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CHMP2AO43633 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.38■□□□□ 0.37
CHMP2AO43633 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.38■□□□□ 0.37
CHMP2AO43633 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
CHMP2AO43633 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.38■□□□□ 0.37
CHMP2AO43633 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 MIR5189-201ENST00000577370 114 ntBASIC17.38■□□□□ 0.37
CHMP2AO43633 AC093813.1-201ENST00000605066 256 ntBASIC17.38■□□□□ 0.37
CHMP2AO43633 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.38■□□□□ 0.37
CHMP2AO43633 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CHMP2AO43633 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC17.38■□□□□ 0.37
CHMP2AO43633 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 AL138799.1-201ENST00000448213 1675 ntBASIC17.38■□□□□ 0.37
CHMP2AO43633 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
CHMP2AO43633 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP2AO43633 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP2AO43633 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP2AO43633 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
CHMP2AO43633 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP2AO43633 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CHMP2AO43633 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CHMP2AO43633 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP2AO43633 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC17.37■□□□□ 0.37
CHMP2AO43633 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP2AO43633 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP2AO43633 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP2AO43633 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP2AO43633 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP2AO43633 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.37■□□□□ 0.37
CHMP2AO43633 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP2AO43633 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms