Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.1■□□□□ 0.01
HDAC3O15379 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
HDAC3O15379 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.1■□□□□ 0.01
HDAC3O15379 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC15.1■□□□□ 0.01
HDAC3O15379 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 AC018529.2-202ENST00000611482 3087 ntBASIC15.1■□□□□ 0.01
HDAC3O15379 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.1■□□□□ 0.01
HDAC3O15379 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
HDAC3O15379 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
HDAC3O15379 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 FAM58CP-201ENST00000435741 640 ntBASIC15.1■□□□□ 0.01
HDAC3O15379 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.1■□□□□ 0.01
HDAC3O15379 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.1■□□□□ 0.01
HDAC3O15379 KRT8P48-201ENST00000515599 1220 ntBASIC15.1■□□□□ 0.01
HDAC3O15379 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.1■□□□□ 0.01
HDAC3O15379 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.1■□□□□ 0.01
HDAC3O15379 RARRES2P9-201ENST00000565168 469 ntBASIC15.1■□□□□ 0.01
HDAC3O15379 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.1■□□□□ 0.01
HDAC3O15379 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HDAC3O15379 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HDAC3O15379 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
HDAC3O15379 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.1■□□□□ 0.01
HDAC3O15379 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.1■□□□□ 0.01
HDAC3O15379 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.1■□□□□ 0.01
HDAC3O15379 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC15.09■□□□□ 0.01
HDAC3O15379 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.09■□□□□ 0.01
HDAC3O15379 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.09■□□□□ 0.01
HDAC3O15379 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
HDAC3O15379 AC041040.2-201ENST00000622926 2899 ntBASIC15.09■□□□□ 0.01
HDAC3O15379 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
HDAC3O15379 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.09■□□□□ 0.01
HDAC3O15379 HIST3H2BA-201ENST00000436555 524 ntBASIC15.09■□□□□ 0.01
HDAC3O15379 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.09■□□□□ 0.01
HDAC3O15379 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.09■□□□□ 0.01
HDAC3O15379 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.09■□□□□ 0.01
HDAC3O15379 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.09■□□□□ 0.01
HDAC3O15379 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.09■□□□□ 0.01
HDAC3O15379 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.09■□□□□ 0.01
HDAC3O15379 AC006504.5-208ENST00000588784 2401 ntBASIC15.09■□□□□ 0.01
HDAC3O15379 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
HDAC3O15379 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 AC027601.5-201ENST00000624065 2482 ntBASIC15.09■□□□□ 0.01
HDAC3O15379 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 HSPA7-201ENST00000445535 1927 ntBASIC15.09■□□□□ 0.01
HDAC3O15379 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.09■□□□□ 0.01
HDAC3O15379 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.09■□□□□ 0.01
HDAC3O15379 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
HDAC3O15379 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
HDAC3O15379 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.09■□□□□ 0.01
HDAC3O15379 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
HDAC3O15379 AC015656.1-201ENST00000624209 3578 ntBASIC15.09■□□□□ 0.01
HDAC3O15379 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDAC3O15379 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms