Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 NME2-201ENST00000393183 568 ntTSL 2 BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 MDH2-205ENST00000461263 648 ntTSL 2 BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 GCOM2-201ENST00000509133 1104 ntBASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 SCARNA21-201ENST00000517026 139 ntBASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 FOS-204ENST00000554617 796 ntTSL 2 BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 AC087045.2-201ENST00000606279 1003 ntBASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 PGAM1P5-201ENST00000548011 764 ntBASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHANK3Q9BYB0 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 AP000845.1-201ENST00000581677 2131 ntBASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 HPN-206ENST00000597419 1212 ntTSL 5 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 AC092171.5-201ENST00000608012 942 ntBASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 AC103691.2-201ENST00000618824 433 ntBASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 AC005618.3-201ENST00000624928 458 ntBASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC19.47■□□□□ 0.71
SHANK3Q9BYB0 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SHANK3Q9BYB0 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms