Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 AC136604.1-201ENST00000418535 575 ntBASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 AL353705.2-201ENST00000428243 662 ntBASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 AC148477.4-201ENST00000613430 1793 ntBASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 FAM45BP-202ENST00000592932 1624 ntBASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRIM56Q9BRZ2 CICP23-201ENST00000605013 2741 ntBASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 MIR4453-201ENST00000584019 89 ntBASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 SNX18-202ENST00000343017 3140 ntBASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.88■□□□□ 0.13
TRIM56Q9BRZ2 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TRIM56Q9BRZ2 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms