Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
AP1S3Q96PC3 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
AP1S3Q96PC3 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC11.83□□□□□ -0.52
AP1S3Q96PC3 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 PASK-203ENST00000403638 5161 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 PAN3-AS1-201ENST00000563843 1351 ntBASIC11.82□□□□□ -0.52
AP1S3Q96PC3 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 AC010336.1-201ENST00000539278 4739 ntBASIC11.82□□□□□ -0.52
AP1S3Q96PC3 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 PCDHGA6-201ENST00000517434 4775 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 STXBP5L-201ENST00000273666 9496 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 ATP5G2P1-201ENST00000433580 426 ntBASIC11.82□□□□□ -0.52
AP1S3Q96PC3 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 AL732292.2-201ENST00000609649 430 ntBASIC11.82□□□□□ -0.52
AP1S3Q96PC3 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 AL355877.3-201ENST00000622820 899 ntBASIC11.82□□□□□ -0.52
AP1S3Q96PC3 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 ERVK13-1-205ENST00000568395 5578 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 SEMA6A-202ENST00000343348 6878 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 AC087481.3-201ENST00000602886 1894 ntBASIC11.82□□□□□ -0.52
AP1S3Q96PC3 LINC01101-201ENST00000622953 1884 ntBASIC11.82□□□□□ -0.52
AP1S3Q96PC3 VWC2-201ENST00000340652 11299 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 LOX-206ENST00000639739 1626 ntTSL 5 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
AP1S3Q96PC3 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 AL139385.1-201ENST00000611744 3272 ntBASIC11.81□□□□□ -0.52
AP1S3Q96PC3 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 MXRA5Y-201ENST00000420610 8000 ntBASIC11.81□□□□□ -0.52
AP1S3Q96PC3 AC008677.1-201ENST00000519230 1561 ntBASIC11.81□□□□□ -0.52
AP1S3Q96PC3 AC006504.4-201ENST00000592118 1568 ntBASIC11.81□□□□□ -0.52
AP1S3Q96PC3 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 MDH2-205ENST00000461263 648 ntTSL 2 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 RPS15P9-201ENST00000494093 319 ntBASIC11.81□□□□□ -0.52
AP1S3Q96PC3 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 AC008608.2-201ENST00000606089 416 ntBASIC11.81□□□□□ -0.52
AP1S3Q96PC3 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC11.81□□□□□ -0.52
AP1S3Q96PC3 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms