Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS52Q8N1B4 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS52Q8N1B4 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS52Q8N1B4 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS52Q8N1B4 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS52Q8N1B4 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
VPS52Q8N1B4 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS52Q8N1B4 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
VPS52Q8N1B4 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS52Q8N1B4 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS52Q8N1B4 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS52Q8N1B4 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS52Q8N1B4 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS52Q8N1B4 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS52Q8N1B4 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 AC134407.2-201ENST00000625089 1978 ntBASIC16.86■□□□□ 0.29
VPS52Q8N1B4 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 AC068587.3-201ENST00000526613 355 ntBASIC16.86■□□□□ 0.29
VPS52Q8N1B4 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 AL603832.2-201ENST00000566195 2125 ntBASIC16.86■□□□□ 0.29
VPS52Q8N1B4 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 AL049840.4-201ENST00000602422 811 ntBASIC16.86■□□□□ 0.29
VPS52Q8N1B4 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 AP001282.1-201ENST00000531301 1499 ntBASIC16.86■□□□□ 0.29
VPS52Q8N1B4 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS52Q8N1B4 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 DBET-201ENST00000630918 3363 ntBASIC16.85■□□□□ 0.29
VPS52Q8N1B4 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 AC005229.1-201ENST00000392885 409 ntBASIC16.85■□□□□ 0.29
VPS52Q8N1B4 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 ACTBP11-201ENST00000436287 1126 ntBASIC16.85■□□□□ 0.29
VPS52Q8N1B4 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 AP001889.1-201ENST00000525414 633 ntBASIC16.85■□□□□ 0.29
VPS52Q8N1B4 FAM8A2P-201ENST00000528813 1142 ntBASIC16.85■□□□□ 0.29
VPS52Q8N1B4 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 RN7SL219P-201ENST00000582872 296 ntBASIC16.85■□□□□ 0.29
VPS52Q8N1B4 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS52Q8N1B4 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms