Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 MIR4525-201ENST00000580000 75 ntBASIC16.3■□□□□ 0.2
RNF43Q68DV7 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 CHCHD2P3-201ENST00000603038 451 ntBASIC16.3■□□□□ 0.2
RNF43Q68DV7 SNX12-206ENST00000622259 661 ntTSL 5 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.3■□□□□ 0.2
RNF43Q68DV7 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RNF43Q68DV7 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 TOMM22P5-201ENST00000416399 439 ntBASIC16.29■□□□□ 0.2
RNF43Q68DV7 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 FAM8A2P-201ENST00000528813 1142 ntBASIC16.29■□□□□ 0.2
RNF43Q68DV7 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 WASH4P-201ENST00000564273 1246 ntBASIC16.29■□□□□ 0.2
RNF43Q68DV7 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 AL450472.2-201ENST00000603663 1156 ntBASIC16.29■□□□□ 0.2
RNF43Q68DV7 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RNF43Q68DV7 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC16.29■□□□□ 0.2
RNF43Q68DV7 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms