Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC17.47■□□□□ 0.39
CCNA1P78396 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 AC016629.1-201ENST00000596579 586 ntBASIC17.47■□□□□ 0.39
CCNA1P78396 AP001002.3-201ENST00000623482 206 ntBASIC17.47■□□□□ 0.39
CCNA1P78396 NFIC-211ENST00000641145 8399 ntBASIC17.47■□□□□ 0.39
CCNA1P78396 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.47■□□□□ 0.39
CCNA1P78396 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 PCDHA12-202ENST00000613593 2588 ntBASIC17.47■□□□□ 0.39
CCNA1P78396 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CCNA1P78396 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.47■□□□□ 0.39
CCNA1P78396 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
CCNA1P78396 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.47■□□□□ 0.39
CCNA1P78396 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.47■□□□□ 0.39
CCNA1P78396 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCNA1P78396 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.46■□□□□ 0.39
CCNA1P78396 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.46■□□□□ 0.39
CCNA1P78396 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCNA1P78396 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CCNA1P78396 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCNA1P78396 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCNA1P78396 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.46■□□□□ 0.39
CCNA1P78396 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCNA1P78396 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCNA1P78396 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
CCNA1P78396 RPL5P21-201ENST00000404620 815 ntBASIC17.46■□□□□ 0.39
CCNA1P78396 CYP46A4P-201ENST00000414953 267 ntBASIC17.46■□□□□ 0.39
CCNA1P78396 AL354877.1-201ENST00000424412 413 ntBASIC17.46■□□□□ 0.39
CCNA1P78396 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC17.46■□□□□ 0.39
CCNA1P78396 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCNA1P78396 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.46■□□□□ 0.39
CCNA1P78396 HIST2H2BB-201ENST00000449108 381 ntBASIC17.46■□□□□ 0.39
CCNA1P78396 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC17.46■□□□□ 0.39
CCNA1P78396 FTLP10-202ENST00000505798 471 ntBASIC17.46■□□□□ 0.39
CCNA1P78396 AC005740.2-201ENST00000511085 419 ntBASIC17.46■□□□□ 0.39
CCNA1P78396 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC17.46■□□□□ 0.39
CCNA1P78396 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCNA1P78396 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CCNA1P78396 AC106820.3-201ENST00000561653 397 ntBASIC17.46■□□□□ 0.39
CCNA1P78396 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC17.46■□□□□ 0.39
CCNA1P78396 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC17.46■□□□□ 0.39
CCNA1P78396 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC17.46■□□□□ 0.39
CCNA1P78396 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC17.46■□□□□ 0.39
CCNA1P78396 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC17.46■□□□□ 0.39
CCNA1P78396 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CCNA1P78396 AC091812.3-201ENST00000621362 345 ntBASIC17.46■□□□□ 0.39
CCNA1P78396 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC17.46■□□□□ 0.39
CCNA1P78396 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCNA1P78396 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CCNA1P78396 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CCNA1P78396 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCNA1P78396 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCNA1P78396 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CCNA1P78396 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCNA1P78396 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
CCNA1P78396 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CCNA1P78396 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CCNA1P78396 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.45■□□□□ 0.38
CCNA1P78396 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCNA1P78396 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.45■□□□□ 0.38
CCNA1P78396 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17.45■□□□□ 0.38
CCNA1P78396 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCNA1P78396 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.45■□□□□ 0.38
CCNA1P78396 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC17.45■□□□□ 0.38
CCNA1P78396 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCNA1P78396 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CCNA1P78396 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCNA1P78396 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCNA1P78396 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.45■□□□□ 0.38
CCNA1P78396 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCNA1P78396 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.45■□□□□ 0.38
CCNA1P78396 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CCNA1P78396 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCNA1P78396 CHMP1AP1-201ENST00000445563 662 ntBASIC17.45■□□□□ 0.38
CCNA1P78396 AC021723.1-201ENST00000486306 515 ntBASIC17.45■□□□□ 0.38
CCNA1P78396 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC17.45■□□□□ 0.38
CCNA1P78396 AC245884.6-201ENST00000515672 1067 ntBASIC17.45■□□□□ 0.38
CCNA1P78396 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.45■□□□□ 0.38
CCNA1P78396 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC17.45■□□□□ 0.38
CCNA1P78396 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC17.45■□□□□ 0.38
CCNA1P78396 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.45■□□□□ 0.38
CCNA1P78396 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC17.45■□□□□ 0.38
CCNA1P78396 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC17.45■□□□□ 0.38
CCNA1P78396 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CCNA1P78396 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCNA1P78396 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCNA1P78396 AC079328.2-201ENST00000561241 3354 ntBASIC17.45■□□□□ 0.38
CCNA1P78396 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CCNA1P78396 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.45■□□□□ 0.38
CCNA1P78396 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC17.45■□□□□ 0.38
CCNA1P78396 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms