Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CXCL12P48061 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL12P48061 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CXCL12P48061 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL12P48061 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL12P48061 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.24■□□□□ 0.03
CXCL12P48061 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
CXCL12P48061 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL12P48061 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC15.24■□□□□ 0.03
CXCL12P48061 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC15.24■□□□□ 0.03
CXCL12P48061 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.24■□□□□ 0.03
CXCL12P48061 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC15.24■□□□□ 0.03
CXCL12P48061 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC15.24■□□□□ 0.03
CXCL12P48061 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC15.24■□□□□ 0.03
CXCL12P48061 RN7SL555P-201ENST00000584742 339 ntBASIC15.24■□□□□ 0.03
CXCL12P48061 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC15.24■□□□□ 0.03
CXCL12P48061 AC012044.1-201ENST00000603431 297 ntBASIC15.24■□□□□ 0.03
CXCL12P48061 AL136301.1-201ENST00000615830 422 ntBASIC15.24■□□□□ 0.03
CXCL12P48061 AL162426.1-201ENST00000624141 743 ntBASIC15.24■□□□□ 0.03
CXCL12P48061 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL12P48061 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CXCL12P48061 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.24■□□□□ 0.03
CXCL12P48061 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC15.24■□□□□ 0.03
CXCL12P48061 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CXCL12P48061 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL12P48061 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.24■□□□□ 0.03
CXCL12P48061 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL12P48061 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC15.24■□□□□ 0.03
CXCL12P48061 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
CXCL12P48061 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL12P48061 AC124067.4-201ENST00000519691 2379 ntBASIC15.24■□□□□ 0.03
CXCL12P48061 AC084364.1-201ENST00000551967 1556 ntBASIC15.24■□□□□ 0.03
CXCL12P48061 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC15.24■□□□□ 0.03
CXCL12P48061 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.23■□□□□ 0.03
CXCL12P48061 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CXCL12P48061 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CXCL12P48061 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC15.23■□□□□ 0.03
CXCL12P48061 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.23■□□□□ 0.03
CXCL12P48061 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 FKBP4P6-201ENST00000457486 1332 ntBASIC15.23■□□□□ 0.03
CXCL12P48061 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.23■□□□□ 0.03
CXCL12P48061 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.23■□□□□ 0.03
CXCL12P48061 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CXCL12P48061 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CXCL12P48061 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC15.23■□□□□ 0.03
CXCL12P48061 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC15.23■□□□□ 0.03
CXCL12P48061 RN7SL818P-201ENST00000485099 259 ntBASIC15.23■□□□□ 0.03
CXCL12P48061 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 AC019193.1-201ENST00000506678 823 ntBASIC15.23■□□□□ 0.03
CXCL12P48061 IGLV3-15-201ENST00000518356 244 ntBASIC15.23■□□□□ 0.03
CXCL12P48061 RN7SL725P-201ENST00000606439 259 ntBASIC15.23■□□□□ 0.03
CXCL12P48061 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CXCL12P48061 COX6A1P2-201ENST00000620597 330 ntBASIC15.23■□□□□ 0.03
CXCL12P48061 AC006453.1-201ENST00000636037 1257 ntBASIC15.23■□□□□ 0.03
CXCL12P48061 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CXCL12P48061 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
CXCL12P48061 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.23■□□□□ 0.03
CXCL12P48061 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CXCL12P48061 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
CXCL12P48061 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC15.22■□□□□ 0.03
CXCL12P48061 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CXCL12P48061 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
CXCL12P48061 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
CXCL12P48061 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CXCL12P48061 RN7SKP214-201ENST00000364208 315 ntBASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms