Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC19.87■□□□□ 0.77
COL18A1P39060 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC19.87■□□□□ 0.77
COL18A1P39060 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
COL18A1P39060 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC19.87■□□□□ 0.77
COL18A1P39060 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL18A1P39060 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL18A1P39060 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC19.87■□□□□ 0.77
COL18A1P39060 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL18A1P39060 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL18A1P39060 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL18A1P39060 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL18A1P39060 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
COL18A1P39060 AC023090.2-201ENST00000625182 2110 ntBASIC19.86■□□□□ 0.77
COL18A1P39060 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL18A1P39060 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
COL18A1P39060 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL18A1P39060 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL18A1P39060 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC19.86■□□□□ 0.77
COL18A1P39060 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC19.86■□□□□ 0.77
COL18A1P39060 DNAJB1P1-201ENST00000429417 1024 ntBASIC19.86■□□□□ 0.77
COL18A1P39060 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC19.86■□□□□ 0.77
COL18A1P39060 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC19.86■□□□□ 0.77
COL18A1P39060 DNM1P30-201ENST00000563586 452 ntBASIC19.86■□□□□ 0.77
COL18A1P39060 AP001065.2-201ENST00000617205 644 ntBASIC19.86■□□□□ 0.77
COL18A1P39060 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
COL18A1P39060 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC19.86■□□□□ 0.77
COL18A1P39060 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.86■□□□□ 0.77
COL18A1P39060 KRT8P31-201ENST00000504812 1408 ntBASIC19.86■□□□□ 0.77
COL18A1P39060 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
COL18A1P39060 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC19.86■□□□□ 0.77
COL18A1P39060 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC19.86■□□□□ 0.77
COL18A1P39060 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC19.86■□□□□ 0.77
COL18A1P39060 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL18A1P39060 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
COL18A1P39060 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL18A1P39060 AC090616.6-203ENST00000579186 1945 ntBASIC19.86■□□□□ 0.77
COL18A1P39060 AC074138.1-201ENST00000611182 1303 ntBASIC19.86■□□□□ 0.77
COL18A1P39060 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL18A1P39060 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL18A1P39060 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL18A1P39060 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC19.86■□□□□ 0.77
COL18A1P39060 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL18A1P39060 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
COL18A1P39060 AC005632.3-201ENST00000605544 308 ntBASIC19.85■□□□□ 0.77
COL18A1P39060 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC19.85■□□□□ 0.77
COL18A1P39060 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL18A1P39060 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
COL18A1P39060 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL18A1P39060 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL18A1P39060 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL18A1P39060 AC012508.2-201ENST00000567613 1472 ntBASIC19.85■□□□□ 0.77
COL18A1P39060 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL18A1P39060 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL18A1P39060 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC19.85■□□□□ 0.77
COL18A1P39060 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL18A1P39060 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL18A1P39060 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL18A1P39060 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
COL18A1P39060 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC19.85■□□□□ 0.77
COL18A1P39060 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL18A1P39060 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC19.85■□□□□ 0.77
COL18A1P39060 GMFG-209ENST00000600322 622 ntTSL 5 BASIC19.85■□□□□ 0.77
COL18A1P39060 BX088702.1-201ENST00000610784 235 ntBASIC19.85■□□□□ 0.77
COL18A1P39060 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL18A1P39060 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL18A1P39060 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC19.85■□□□□ 0.77
COL18A1P39060 CICP13-201ENST00000422015 2789 ntBASIC19.85■□□□□ 0.77
COL18A1P39060 PCDH8P1-201ENST00000428983 2773 ntBASIC19.85■□□□□ 0.77
COL18A1P39060 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
COL18A1P39060 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC19.84■□□□□ 0.77
COL18A1P39060 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC19.84■□□□□ 0.77
COL18A1P39060 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL18A1P39060 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL18A1P39060 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL18A1P39060 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL18A1P39060 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC19.84■□□□□ 0.77
COL18A1P39060 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC19.84■□□□□ 0.77
COL18A1P39060 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL18A1P39060 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL18A1P39060 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC19.84■□□□□ 0.77
COL18A1P39060 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL18A1P39060 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC19.84■□□□□ 0.77
COL18A1P39060 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC19.84■□□□□ 0.77
COL18A1P39060 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC19.84■□□□□ 0.77
COL18A1P39060 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC19.84■□□□□ 0.77
COL18A1P39060 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.84■□□□□ 0.77
COL18A1P39060 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL18A1P39060 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL18A1P39060 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL18A1P39060 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL18A1P39060 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.84■□□□□ 0.77
COL18A1P39060 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL18A1P39060 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC19.84■□□□□ 0.77
COL18A1P39060 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC19.84■□□□□ 0.77
COL18A1P39060 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL18A1P39060 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL18A1P39060 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.83■□□□□ 0.77
COL18A1P39060 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC19.83■□□□□ 0.77
COL18A1P39060 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC19.83■□□□□ 0.77
COL18A1P39060 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms