Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
SHMT2P34897 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
SHMT2P34897 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.22■□□□□ 0.03
SHMT2P34897 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.22■□□□□ 0.03
SHMT2P34897 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
SHMT2P34897 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
SHMT2P34897 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.22■□□□□ 0.03
SHMT2P34897 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
SHMT2P34897 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SHMT2P34897 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.21■□□□□ 0.03
SHMT2P34897 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHMT2P34897 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHMT2P34897 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHMT2P34897 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.21■□□□□ 0.03
SHMT2P34897 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.21■□□□□ 0.03
SHMT2P34897 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SHMT2P34897 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHMT2P34897 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHMT2P34897 AP003680.1-201ENST00000598970 3660 ntBASIC15.21■□□□□ 0.03
SHMT2P34897 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SHMT2P34897 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.21■□□□□ 0.03
SHMT2P34897 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHMT2P34897 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.21■□□□□ 0.03
SHMT2P34897 AC068587.6-202ENST00000641839 5619 ntBASIC15.21■□□□□ 0.03
SHMT2P34897 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SHMT2P34897 AC026748.1-201ENST00000624349 3251 ntBASIC15.21■□□□□ 0.03
SHMT2P34897 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHMT2P34897 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SHMT2P34897 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHMT2P34897 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHMT2P34897 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.21■□□□□ 0.03
SHMT2P34897 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.21■□□□□ 0.03
SHMT2P34897 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.21■□□□□ 0.03
SHMT2P34897 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC15.21■□□□□ 0.03
SHMT2P34897 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.21■□□□□ 0.03
SHMT2P34897 API5-211ENST00000534695 560 ntTSL 5 BASIC15.21■□□□□ 0.03
SHMT2P34897 SPDYE22P-201ENST00000582158 798 ntBASIC15.21■□□□□ 0.03
SHMT2P34897 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.21■□□□□ 0.03
SHMT2P34897 AL662799.1-202ENST00000614205 422 ntBASIC15.21■□□□□ 0.03
SHMT2P34897 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.21■□□□□ 0.03
SHMT2P34897 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHMT2P34897 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHMT2P34897 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHMT2P34897 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHMT2P34897 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SHMT2P34897 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.21■□□□□ 0.03
SHMT2P34897 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SHMT2P34897 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SHMT2P34897 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SHMT2P34897 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
SHMT2P34897 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
SHMT2P34897 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
SHMT2P34897 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.21■□□□□ 0.02
SHMT2P34897 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
SHMT2P34897 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
SHMT2P34897 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.21■□□□□ 0.02
SHMT2P34897 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 AC020658.6-201ENST00000623564 1870 ntBASIC15.2■□□□□ 0.02
SHMT2P34897 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.2■□□□□ 0.02
SHMT2P34897 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.2■□□□□ 0.02
SHMT2P34897 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.2■□□□□ 0.02
SHMT2P34897 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SHMT2P34897 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.2■□□□□ 0.02
SHMT2P34897 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SHMT2P34897 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.2■□□□□ 0.02
SHMT2P34897 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SHMT2P34897 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.2■□□□□ 0.02
SHMT2P34897 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SHMT2P34897 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC15.2■□□□□ 0.02
SHMT2P34897 AL133267.1-201ENST00000398220 340 ntBASIC15.2■□□□□ 0.02
SHMT2P34897 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.2■□□□□ 0.02
SHMT2P34897 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.2■□□□□ 0.02
SHMT2P34897 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.2■□□□□ 0.02
SHMT2P34897 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SHMT2P34897 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.2■□□□□ 0.02
SHMT2P34897 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms