Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC007686.3-201ENST00000619017 3487 ntBASIC14.79□□□□□ -0.04
SDC1P18827 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.79□□□□□ -0.04
SDC1P18827 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDC1P18827 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
SDC1P18827 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
SDC1P18827 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 AC232323.1-201ENST00000540724 2099 ntBASIC14.78□□□□□ -0.04
SDC1P18827 REXO1L5P-201ENST00000622260 2098 ntBASIC14.78□□□□□ -0.04
SDC1P18827 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 AL121723.1-201ENST00000445194 1519 ntBASIC14.78□□□□□ -0.04
SDC1P18827 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SDC1P18827 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.78□□□□□ -0.04
SDC1P18827 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
SDC1P18827 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SDC1P18827 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.78□□□□□ -0.04
SDC1P18827 CNN2P2-201ENST00000443536 909 ntBASIC14.78□□□□□ -0.04
SDC1P18827 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.78□□□□□ -0.04
SDC1P18827 CNN2P3-201ENST00000450201 906 ntBASIC14.78□□□□□ -0.04
SDC1P18827 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.78□□□□□ -0.04
SDC1P18827 KRT18P43-201ENST00000469825 1281 ntBASIC14.78□□□□□ -0.04
SDC1P18827 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SDC1P18827 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SDC1P18827 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.78□□□□□ -0.04
SDC1P18827 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
SDC1P18827 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.78□□□□□ -0.04
SDC1P18827 AL136317.3-201ENST00000618497 906 ntBASIC14.78□□□□□ -0.04
SDC1P18827 AC073592.8-201ENST00000624126 511 ntBASIC14.78□□□□□ -0.04
SDC1P18827 AL109936.8-201ENST00000641772 604 ntBASIC14.78□□□□□ -0.04
SDC1P18827 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.78□□□□□ -0.04
SDC1P18827 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SDC1P18827 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.78□□□□□ -0.04
SDC1P18827 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.78□□□□□ -0.04
SDC1P18827 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.78□□□□□ -0.04
SDC1P18827 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SDC1P18827 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SDC1P18827 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.78□□□□□ -0.04
SDC1P18827 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDC1P18827 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.77□□□□□ -0.04
SDC1P18827 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SDC1P18827 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDC1P18827 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDC1P18827 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDC1P18827 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.77□□□□□ -0.04
SDC1P18827 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDC1P18827 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDC1P18827 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDC1P18827 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.77□□□□□ -0.04
SDC1P18827 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SDC1P18827 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDC1P18827 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.77□□□□□ -0.04
SDC1P18827 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDC1P18827 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SDC1P18827 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SDC1P18827 TUBB3P1-201ENST00000405796 1332 ntBASIC14.77□□□□□ -0.04
SDC1P18827 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDC1P18827 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SDC1P18827 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.77□□□□□ -0.05
SDC1P18827 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.77□□□□□ -0.05
SDC1P18827 TOMM22P5-201ENST00000416399 439 ntBASIC14.77□□□□□ -0.05
SDC1P18827 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.77□□□□□ -0.05
SDC1P18827 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.77□□□□□ -0.05
SDC1P18827 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.77□□□□□ -0.05
SDC1P18827 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.77□□□□□ -0.05
SDC1P18827 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.77□□□□□ -0.05
SDC1P18827 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.77□□□□□ -0.05
SDC1P18827 AC125807.1-201ENST00000483097 614 ntBASIC14.77□□□□□ -0.05
SDC1P18827 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
SDC1P18827 CALM1-205ENST00000553542 877 ntTSL 5 BASIC14.77□□□□□ -0.05
SDC1P18827 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.77□□□□□ -0.05
SDC1P18827 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.77□□□□□ -0.05
SDC1P18827 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.77□□□□□ -0.05
SDC1P18827 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SDC1P18827 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.77□□□□□ -0.05
SDC1P18827 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SDC1P18827 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SDC1P18827 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
SDC1P18827 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SDC1P18827 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SDC1P18827 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SDC1P18827 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.05
SDC1P18827 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SDC1P18827 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SDC1P18827 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
SDC1P18827 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SDC1P18827 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms